Architecture#
Lamin’s high-level API is currently Python only but might include other languages in the future.
On a lower level, data is stored in SQL databases and otherwise language-independent storage formats.
LaminDB#
LaminDB provides the core API.
Standalone modules#
Two data modules can be used standalone.
nbproject: Manage Jupyter notebooks. Open-source ELN for the drylab.
Manage notebooks with metadata, dependency, and integrity tracking.
Sketch pipelines and share reproducible notebooks with context.
Track data flow in and out of notebooks.
Bionty: Manage biological entities.
Lookup & curate metadata based on scientific standards.
Access biological knowledge without the timeouts of many existing REST endpoints.
Open-sourced data modules#
Below follow Python packages behind LaminDB.
Reach out for non-listed closed-source extensions and maintenance of an enterprise data platform.
Docs |
GitHub |
Monthly & total downloads |
Latest version |
Publication |
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Core |
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lamindb: Manage data & analyses |
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lnschema-core: Data lineage |
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Biological knowledge |
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bionty: Manage biological entities |
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lnschema-bionty: Knowledge models |
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Wetlab & readouts |
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lnschema-wetlab: Base models for the wetlab |
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readfcs: Read FCS files |
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Drylab |
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nbproject: Manage Jupyter notebooks |
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lnschema-drylab: Generic drylab |
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Visualization |
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erdiagram: Entity relationship diagrams |
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Test instances |
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lamin-site-assets: Manage data assets of this website |
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bionty-assets: Knowledge assets for Bionty |
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Benchmarking notes |
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lndb-benchmarks: Benchmarks |
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Dev utils |
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lndb: Setup & configure LaminDB |
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lndocs: Lamin static website builder |
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lamin-logger: Logging |
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nbproject-test: Test notebooks |
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exportpy: Dynamic classes as Python code |
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