Changelog#

Name

PR

Developer

Date

Version

โž• Bring back lnfbx

459

falexwolf

2023-01-26

0.25.5

๐Ÿ“ Prettier section headings in the docs

456

sunnyosun

2023-01-26

๐Ÿ“Œ Pin s3fs and gcsfs to the latest versions

458

falexwolf

2023-01-26

0.25.4

๐Ÿšธ Auto-populate relationship-associated foreign key fields

457

bpenteado

2023-01-26

0.25.3

๐Ÿ› Fix strict type checking for relationships

455

bpenteado

2023-01-24

0.25.2

๐Ÿฉบ Increase migrations testing robustness postgres

454

falexwolf

2023-01-24

๐Ÿ“ Remove linked-select notebook

453

falexwolf

2023-01-24

โฌ†๏ธ Upgrade lnschema-core to 0.25.1

452

bpenteado

2023-01-23

0.25.1

โœจ Add explicit remote sqlite instance locking to write operations

447

Koncopd

2023-01-23

โ™ป๏ธ Refactored FAQ

448

sunnyosun

2023-01-23

๐Ÿ“ Create data validation FAQ

451

bpenteado

2023-01-23

โž– Remove s3fs dependency

450

fredericenard

2023-01-23

โฌ†๏ธ Upgrade lndb-setup to 0.30.8

449

fredericenard

2023-01-23

๐Ÿฉน Better treat edge cases upon signup, login, failed instance loading

446

falexwolf

2023-01-20

0.25.0

๐Ÿšธ Introduce data validation on the ORM level

445

bpenteado

2023-01-20

โ™ป๏ธ Reorganize quickstart and get-started

444

sunnyosun

2023-01-20

๐Ÿ“ Refactor init guide and show bionty versions in guide

443

sunnyosun

2023-01-18

0.24.6

โฌ†๏ธ Upgrade wetlab schema to 0.13.3

442

sunnyosun

2023-01-17

0.24.5

๐Ÿ› Fix taxon_id type and upgrade bionty

441

sunnyosun

2023-01-17

0.24.4

โฌ†๏ธ Upgrade to lnschema-bionty 0.6.7

440

sunnyosun

2023-01-17

โฌ†๏ธ Upgrade to lndb-setup 0.30.6

439

sunnyosun

2023-01-16

0.24.3

โฌ†๏ธ Upgrade to lndb_setup==0.30.5

438

sunnyosun

2023-01-16

0.24.2

โฌ†๏ธ Upgrade lndb-setup to 0.30.4

437

sunnyosun

2023-01-16

0.24.1

โฌ†๏ธ Upgrade to lndb-setup 0.30.2

436

falexwolf

2023-01-16

0.24.0

๐Ÿšธ Better hash exception

434

falexwolf

2023-01-12

๐Ÿšธ Safer session behavior 2/2 Breaking

432

falexwolf

2023-01-12

0.23.0

๐Ÿ‘ท Extend CI to py3.8-3.10

431

sunnyosun

2023-01-12

0.22.5

๐Ÿšธ Safer session behavior 1/2

430

falexwolf

2023-01-11

โฌ†๏ธ Upgrade lndb-setup

428

fredericenard

2023-01-10

๐Ÿ“ Re-arrange notebooks

427

falexwolf

2023-01-09

๐Ÿšธ Make ln.nb.header() more robust

426

falexwolf

2023-01-09

0.22.4

๐Ÿ“ Improving wording of definitions

424

falexwolf

2023-01-08

๐Ÿ“ Fixes for lndocs upgrade

423

falexwolf

2023-01-08

โ™ป๏ธ Refactor guide

422

sunnyosun

2023-01-08

โฌ†๏ธ Upgrade lnschema-bionty to 0.6.5

421

falexwolf

2023-01-05

0.22.3

โฌ†๏ธ Upgrade to lndb-setup 0.28.1

420

falexwolf

2023-01-05

Fix typos

418

Zethson

2023-01-02

๐Ÿ› Fix bugs in lndb set & lndb info

415

falexwolf

2022-12-22

0.22.2

โœ… Error behavior for ingest

414

falexwolf

2022-12-20

๐ŸŽจ Simplify

413

sunnyosun

2022-12-16

โฌ†๏ธ Upgrade lndb-setup

412

falexwolf

2022-12-16

0.22.1

๐Ÿšธ Better CLI & logging

411

falexwolf

2022-12-15

0.22.0

โฌ†๏ธ Updated setup

409

sunnyosun

2022-12-15

0.21.5

๐Ÿšธ Make nb.run and nb.notebook public

408

falexwolf

2022-12-14

โฌ†๏ธ Upgrade wetlab

407

bpenteado

2022-12-13

0.21.4

โฌ†๏ธ Upgrade lndb-setup

405

falexwolf

2022-12-13

0.21.3

โฌ†๏ธ Upgrade lndb-setup

404

sunnyosun

2022-12-13

0.21.2

โฌ†๏ธ Upgrade lndb-setup

403

falexwolf

2022-12-12

0.21.1

๐Ÿ“ Fix docs

402

falexwolf

2022-12-09

๐ŸŽจ Integrate ln.record into lns.DObject โ†’ ln.DObject

400

sunnyosun

2022-12-09

0.21.0

โฌ†๏ธ Upgrade setup, core & wetlab schema

398

falexwolf

2022-12-08

0.20.0

๐Ÿ”ฅ Drop all logic related to dynamic settings

397

fredericenard

2022-12-08

โฌ†๏ธ Upgrade wetlab

395

bpenteado

2022-12-06

0.19.4

โฌ†๏ธ Upgrade wetlab

394

bpenteado

2022-12-06

0.19.3

โฌ†๏ธ Upgrade wetlab

393

sunnyosun

2022-12-06

0.19.2

๐Ÿ› Fix view

392

falexwolf

2022-12-05

0.19.1

๐ŸŽจ Enable inheriting wetlab schemas

391

falexwolf

2022-12-05

0.19.0

โœ… Better tests for features hashing

390

falexwolf

2022-12-04

โฌ†๏ธ Upgrade lndb-setup

389

fredericenard

2022-12-04

0.18.9

โœจ Check duplication before inserting records

387

sunnyosun

2022-11-30

0.18.8

๐Ÿšธ Do not autoflush upon select

386

falexwolf

2022-11-30

0.18.7

๐Ÿ› Fix bug in schema module name lookup

384

falexwolf

2022-11-29

โฌ†๏ธ Updated wetlab

383

sunnyosun

2022-11-29

0.18.6

โฌ†๏ธ Upgrade lnschema-core and lndb-setup

382

falexwolf

2022-11-28

0.18.5

โœจ Improve lazy selectors

375

Koncopd

2022-11-28

โฌ†๏ธ Update wetlab schema

381

sunnyosun

2022-11-28

0.18.4

โฌ†๏ธ Upgrade wetlab schema

380

sunnyosun

2022-11-28

0.18.3

โฌ†๏ธ Upgrade lndb-setup & lnschema-core

379

fredericenard

2022-11-28

0.18.2

โฌ†๏ธ Upgrade lndb-setup to 0.18.1

378

falexwolf

2022-11-25

๐Ÿ”ฅ Removed bioreadout

373

sunnyosun

2022-11-24

0.18.1

โœจ Add lazy selectors to ln.subset

370

Koncopd

2022-11-23

๐Ÿ—๏ธ Persist the session

372

falexwolf

2022-11-23

โฌ†๏ธ Upgrade lndb-setup

371

fredericenard

2022-11-23

โœจ Add subset function for dobjects

368

Koncopd

2022-11-23

0.18.0

๐ŸŽจ Drop Biometa

369

falexwolf

2022-11-22

๐ŸŽจ Simplify schema module handling

367

falexwolf

2022-11-22

๐Ÿ“ Bring back guide to linking sample-level metadata

365

falexwolf

2022-11-21

0.17.0

๐Ÿ“ Add flow example back to main guide

363

falexwolf

2022-11-21

๐Ÿ“ Update schema

362

falexwolf

2022-11-21

๐Ÿฉน Restore default fsspec for upload

361

Koncopd

2022-11-20

๐ŸŽจ Prettify API

359

falexwolf

2022-11-18

๐Ÿ› Also return existing features

358

falexwolf

2022-11-18

๐Ÿ“ Fix select gene doc

357

falexwolf

2022-11-18

๐Ÿ—๏ธ Refactor ingest

356

falexwolf

2022-11-17

โœจ Knowledge guide

353

sunnyosun

2022-11-16

๐ŸŽจ Separate nb.publish from ingest.commit

355

falexwolf

2022-11-16

0.16.0

๐Ÿ› Fix data source

354

falexwolf

2022-11-15

๐Ÿšš Move storage key to core schema

352

falexwolf

2022-11-14

0.15.0

๐Ÿ› Fixed species_id in bio entity tables

351

sunnyosun

2022-11-14

โœจ Initialize Jupynb run upon nb.header()

350

falexwolf

2022-11-12

0.14.0

๐Ÿ—๏ธ Aggregate Run and DTransform

349

falexwolf

2022-11-12

โฌ†๏ธ Updated bionty

348

sunnyosun

2022-11-11

๐Ÿ“ Make notebook for link_features

347

falexwolf

2022-11-11

0.13.0

โœจ Join dataframes

345

falexwolf

2022-11-10

โœจ Fields in join

344

falexwolf

2022-11-10

โœ… Add tests for zarr ingest and load

342

Koncopd

2022-11-10

๐Ÿšš Rename PipelineRun to Run

343

falexwolf

2022-11-10

๐Ÿ› Fix view

341

falexwolf

2022-11-09

0.12.1

๐Ÿšš Rename view arg

340

falexwolf

2022-11-09

0.12.0

๐Ÿ“ Refactor select notebooks

339

falexwolf

2022-11-08

๐Ÿ“ Simplify arg in link

338

falexwolf

2022-11-08

โ™ป๏ธ Refactor select

337

falexwolf

2022-11-08

โฌ†๏ธ Update to bionty==0.5.3

334

sunnyosun

2022-11-06

๐Ÿšš Rename entries to records in link

333

sunnyosun

2022-11-04

๐Ÿ“ Improve guide

332

falexwolf

2022-11-04

๐ŸŽจ Migrate to the new schema modules

331

falexwolf

2022-11-04

0.11.0

๐Ÿ”ฅ Removed link_biometa

330

sunnyosun

2022-11-03

๐ŸŽจ Removed get, re-organized API docs

329

sunnyosun

2022-11-03

๐Ÿšš Move .db API to root level

328

sunnyosun

2022-11-03

๐Ÿšš Remove A prefix from notebooks

327

falexwolf

2022-11-03

โœจ Storage related features

322

Koncopd

2022-11-03

๐ŸŽจ Simplify generating records

326

sunnyosun

2022-11-02

๐Ÿ› Fixed bug in linking features

325

sunnyosun

2022-11-01

๐Ÿฑ Added anndata_mouse_sc_lymph_node

324

sunnyosun

2022-11-01

๐Ÿšš Rename schema._table.Table to table_meta

323

sunnyosun

2022-11-01

๐ŸŽจ Added LinkFeatureToKnowledgeTable

320

sunnyosun

2022-10-31

โฌ†๏ธ Update lndb setup

321

fredericenard

2022-10-27

0.10.0

โฌ†๏ธ Pinned bionty version

319

sunnyosun

2022-10-26

โฌ†๏ธ Updated to lnschema_bionty 0.4.4

317

sunnyosun

2022-10-24

๐Ÿ”ฅ Remove lndb-hub import

318

fredericenard

2022-10-24

โœจ Enable to get metadata from InstanceSettingsStore

310

fredericenard

2022-10-24

๐Ÿ“ Rename row to record when not yet added to the DB

316

falexwolf

2022-10-23

โฌ†๏ธ Update lndb hub version

315

fredericenard

2022-10-23

๐ŸŽจ Replace insert and update with add

308

falexwolf

2022-10-22

โฌ†๏ธ Upgrade lnbfx to 0.4.5

311

bpenteado

2022-10-22

๐Ÿ“ Update postgres faq notebook

314

bpenteado

2022-10-22

๐Ÿšš Moved the rds notebooks to rnd-demo repo

309

sunnyosun

2022-10-21

โœจ Added ln.link to populate link tables given two table entries

307

sunnyosun

2022-10-21

๐Ÿ”ฅ Remove hub import

301

fredericenard

2022-10-21

๐ŸŽจ Overhaul select and add get

300

falexwolf

2022-10-21

๐Ÿฉน Skip nc_evolutions table created by nocodb

302

sunnyosun

2022-10-21

โœจ Added knowledge module

299

sunnyosun

2022-10-20

โฌ†๏ธ Upgrade wetlab schema

297

sunnyosun

2022-10-20

0.9.6

โฌ†๏ธ Added dset and project tables to core

296

sunnyosun

2022-10-19

0.9.5

๐Ÿฉน Fixed rds nbs

295

sunnyosun

2022-10-18

๐Ÿ“ Add prisma examples and implementation ideas

294

fredericenard

2022-10-18

โ™ป๏ธ Refactor linked select

286

sunnyosun

2022-10-18

0.9.4

โœ๏ธ Fix typo in link table entry fetching

292

bpenteado

2022-10-17

๐Ÿ› Fixed link via link tables

291

sunnyosun

2022-10-15

0.9.3

โœจ Add an option to use fsspec for upload

288

Koncopd

2022-10-15

โœจ Load returns filepath if no in-memory format is found

287

sunnyosun

2022-10-13

0.9.2

๐ŸŽจ Clean up dtransform_in

commit

falexwolf

2022-10-13

0.9.1

๐ŸŽจ Continue overhaul

285

falexwolf

2022-10-13

0.9.0

๐ŸŽจ Refactor linking dobjects & base64 encode checksum

283

falexwolf

2022-10-13

๐Ÿ› View only prints existing tables

284

sunnyosun

2022-10-12

โœจ Added db.view, rename schema.draw to schema.view

282

sunnyosun

2022-10-12

0.8.3

โฌ†๏ธ Added bioreadout lookup to guide

281

sunnyosun

2022-10-12

๐Ÿšš Rename query to select

280

falexwolf

2022-10-12

๐Ÿฉน Fix out of sync db warning

279

Koncopd

2022-10-12

โœจ Add streaming zarr write and streaming h5ad and zarr read

277

Koncopd

2022-10-12

๐Ÿ’„ Cosmetics

276

falexwolf

2022-10-12

โ™ป๏ธ Refactor ingest & insert

273

falexwolf

2022-10-11

โœจ Compute checksum during ingest

274

fredericenard

2022-10-11

๐Ÿšš Moved bfx ingestion to faq

272

sunnyosun

2022-10-11

โฌ†๏ธ Upgrade to lndb_setup 0.12.0

271

falexwolf

2022-10-10

0.8.2

๐Ÿ“ Improved ingest guides, fixed linked entry bugs

270

sunnyosun

2022-10-10

๐Ÿ› Fixed dobject_biometa entry insertion

269

sunnyosun

2022-10-10

0.8.1

๐Ÿ“ Update test users in docs

268

falexwolf

2022-10-10

โฌ†๏ธ Upgrade lndb_setup to 0.11.0 and nbproject to 0.7.0

267

falexwolf

2022-10-10

0.8.0

๐ŸŽจ insert.from_list accepts entries

266

sunnyosun

2022-10-10

โฌ†๏ธ Upgrade nbproject version to 0.5.5

265

Koncopd

2022-10-10

โฌ†๏ธ Upgrade lndb_setup version to 0.10.1

264

fredericenard

2022-10-10

๐Ÿ“ Improved docs of ingest, reorganized file structure

262

sunnyosun

2022-10-10

0.7.2

๐Ÿ’ฅ Refactor ingest, new pipeline ingestion logic, postgres test

257

sunnyosun

2022-10-08

0.7.1

๐Ÿ“ Overhauled get-started

259

falexwolf

2022-10-07

๐Ÿšธ Check for existence before deletion

258

falexwolf

2022-10-07

๐ŸŽจ Make ingest a static class

256

sunnyosun

2022-10-07

0.7.0

โฌ†๏ธ Upgrade to core schema 0.10.0

255

falexwolf

2022-10-07

โœจ New ingest API

254

sunnyosun

2022-10-05

0.6.0

๐Ÿ“ Overhaul documentation

253

falexwolf

2022-10-05

๐Ÿ”ง Update lndb setup to 0.9.4

252

fredericenard

2022-10-04

๐Ÿ”ง Enable setup outside cli

250

fredericenard

2022-10-04

โฌ†๏ธ Upgrade lndb_setup and bionty

249

falexwolf

2022-10-03

0.5.0 0.5.0

๐Ÿšธ Check for migrations upon import

247

falexwolf

2022-10-03

๐Ÿ”Š Raise warnings for unpopulated columns from insert.from_df

248

sunnyosun

2022-10-03

โฌ†๏ธ Upgrade lndb_setup to 0.8.3

246

fredericenard

2022-10-03

โ™ป๏ธ Inherit IngestObject and IngestPipelineRun from IngestEntity

243

bpenteado

2022-10-01

0.4.1

โฌ†๏ธ Upgrade to lnschema_core 0.9.0

241

falexwolf

2022-09-30

๐ŸŽจ Add type annotation to ingest

240

sunnyosun

2022-09-30

โ™ป๏ธ Generalize pipeline ingestion

237

bpenteado

2022-09-30

โœจ Added one_or_none, fixed api links

238

sunnyosun

2022-09-29

๐ŸŽจ Get db metadata as a dictionary

233

fredericenard

2022-09-29

๐ŸŽจ Added .df() as an option to return select results

236

sunnyosun

2022-09-29

โฌ†๏ธ Upgrade pkg versions

234

sunnyosun

2022-09-29

๐Ÿšธ Test notebook integrity before anything else

232

falexwolf

2022-09-26

๐Ÿ“ Add a quickstart & update ingest

231

falexwolf

2022-09-26

๐Ÿ“ Update bfx ingestion demo

227

bpenteado

2022-09-26

๐Ÿšš Rename insert.features to insert.featureset_from_features

230

sunnyosun

2022-09-26

๐Ÿ“ Polish documentation

229

falexwolf

2022-09-26

โœจ Populate dobject size

228

falexwolf

2022-09-26

๐Ÿšธ Sort select results in DataFrame by source

226

falexwolf

2022-09-25

โฌ†๏ธ Upgrade to core schema 0.7.3

223

falexwolf

2022-09-25

๐Ÿฉน Removed logging for inserting link tables

221

sunnyosun

2022-09-24

โœจ Ingest bfx outputs with sample metadata

215

bpenteado

2022-09-24

๐Ÿ‘ท Improve notebook test function

218

falexwolf

2022-09-23

๐Ÿงฑ Improved code infra

216

sunnyosun

2022-09-23

0.4.0

โœจ Account for multiple filepath suffixes

214

falexwolf

2022-09-23

โ™ป๏ธ Refactored feature model ingestion

213

sunnyosun

2022-09-23

โ™ป๏ธ Refactored insert

211

sunnyosun

2022-09-22

โฌ†๏ธ Upgrade lndb_setup and lnschema_bionty

212

falexwolf

2022-09-22

โฌ†๏ธ Upgrade to core schema 0.7.2

208

falexwolf

2022-09-21

๐Ÿš‘ dtransform is either pipeline_run or jupynb

207

sunnyosun

2022-09-21

0.3.11

๐Ÿ› Fixed column mapping

206

sunnyosun

2022-09-19

0.3.10

โœจ Allow batch insertion

205

sunnyosun

2022-09-19

โ™ป๏ธ Refactored linked queries

204

sunnyosun

2022-09-15

โฌ†๏ธ Update lnbfx to 0.3.5

199

bpenteado

2022-09-14

0.3.9

๐Ÿ”Š Refactor pipeline logging

197

bpenteado

2022-09-14

0.3.8

โœจ Insert unmapped features

198

sunnyosun

2022-09-14

โ™ป๏ธ Refactored linked queries

196

sunnyosun

2022-09-13

โฌ†๏ธ Updated wetlab schema

195

sunnyosun

2022-09-13

โ™ป๏ธ Refactor pipeline logging

193

bpenteado

2022-09-13

0.3.7

โฌ†๏ธ Updated lnbfx version

194

sunnyosun

2022-09-12

0.3.6

๐Ÿฑ Updated cell ranger test dir

192

sunnyosun

2022-09-12

๐Ÿ› Fix synchronization error in load

191

Koncopd

2022-09-12

โฌ†๏ธ Updated setup version

189

sunnyosun

2022-09-08

0.3.5

โ™ป๏ธ Split ingestion logic into IngestObject and IngestPipeline

188

bpenteado

2022-09-06

๐Ÿ“ Add flow data ingestion example

186

sunnyosun

2022-09-06

๐Ÿ’„ Added sidebar to guide

185

sunnyosun

2022-09-06

โ™ป๏ธ Split pipeline ingestion from non-pipeline ingestion

183

bpenteado

2022-09-06

โฌ†๏ธ Updated schema module versions

184

sunnyosun

2022-09-06

โ™ป๏ธ Refactored select

182

sunnyosun

2022-09-05

๐Ÿšš Rename return_df to as_df in select

181

sunnyosun

2022-09-05

๐Ÿšš Rename guides to faq & tutorials to guide

180

falexwolf

2022-09-05

โ™ป๏ธ Refactored guide

179

sunnyosun

2022-09-03

๐Ÿ“ Prettify documentation

178

falexwolf

2022-09-02

Update lndb_hub version

176

fredericenard

2022-09-01

โœจ Allow selecting dobjects by biological entities

175

sunnyosun

2022-09-01

0.3.4

โฌ†๏ธ Update to sqm 0.0.8 to silence the warnings

174

sunnyosun

2022-08-30

๐Ÿคก R&D team simulation

172

sunnyosun

2022-08-30

๐Ÿšธ Fix pipeline ingestion logging

158

bpenteado

2022-08-30

๐Ÿšš Move problems page to lamin-profile

171

falexwolf

2022-08-30

๐Ÿฉน Uncomment out sharing tests

168

fredericenard

2022-08-30

๐Ÿ”ฅ Removed examples dir

170

sunnyosun

2022-08-30

๐Ÿšธ Improve delete function

169

falexwolf

2022-08-30

๐ŸŽจ Remove track submodule, move session, rename biogram to erdiagram

167

falexwolf

2022-08-29

๐Ÿšš Rename .do to .db

166

falexwolf

2022-08-29

๐ŸŽจ Move header call to nb, re-export all of nbproject

165

falexwolf

2022-08-29

๐Ÿ‘ท Get rid of sqm warnings

164

falexwolf

2022-08-29

๐ŸŽจ Simplify loading data

163

falexwolf

2022-08-29

๐Ÿ‘ท Allow stripping notebooks, upgrade nbproject_test

162

falexwolf

2022-08-29

0.3.3

โœจ Use cell_marker feature model for flow data

161

sunnyosun

2022-08-28

โฌ†๏ธ Updated to bionty 0.2.2

160

sunnyosun

2022-08-28

โฌ†๏ธ Updated to sqm 0.0.7

159

sunnyosun

2022-08-28

โฌ†๏ธ Updated dependencies

157

sunnyosun

2022-08-28

โฌ†๏ธ Upgrade to lnschema_core 0.5.1

156

falexwolf

2022-08-26

โ™ป๏ธ Update pipeline ingestion to lnschema_core 0.5.0

154

bpenteado

2022-08-26

๐Ÿฑ Add scrnaseq cellranger dataset

151

bpenteado

2022-08-26

๐Ÿ› Fix population of dtransform

155

falexwolf

2022-08-26

โœจ Populate dtransform_in

153

falexwolf

2022-08-26

โฌ†๏ธ Updated dependencies

152

sunnyosun

2022-08-26

0.3.2

โ™ป๏ธ Refactor lnbfx integration

149

bpenteado

2022-08-26

๐Ÿšง Temporary solution to extend modules

150

sunnyosun

2022-08-25

0.3.1

๐Ÿ—๏ธ Make tables within schema modules configurable

148

falexwolf

2022-08-25

0.3.0

โœ๏ธ Fixed typo in check versions

147

sunnyosun

2022-08-24

๐Ÿ—๏ธ Use id to reference storage

146

fredericenard

2022-08-23

๐Ÿšš Renamed FeatureModel to LinkFeatureModel

145

sunnyosun

2022-08-23

โฌ†๏ธ Upgrade to lnbfx 0.2.0

144

falexwolf

2022-08-23

๐Ÿšš Renamed id to key in update and delete APIs

143

sunnyosun

2022-08-23

โ™ป๏ธ Cleaned up and added a mouse dataset

142

sunnyosun

2022-08-23

โฌ†๏ธ Upgrade lndb-hub to v0.5.0

140

fredericenard

2022-08-23

๐Ÿ’„ Added logging to update and delete

141

sunnyosun

2022-08-22

โœจ Autogenerate select, update and delete

139

sunnyosun

2022-08-22

โฌ†๏ธ Upgrade core schema to v0.4.0

138

falexwolf

2022-08-22

โœจ Track storage root location

137

fredericenard

2022-08-22

๐Ÿšš Rename schema modules and bioinformatics module

136

falexwolf

2022-08-19

โœจ Integrate bioinformatics pipline runs

133

bpenteado

2022-08-18

๐Ÿ“ Updated docs

135

sunnyosun

2022-08-18

๐Ÿ‘ฝ Adapt to lnschema-bionty 0.1.4

134

sunnyosun

2022-08-18

โšก Ingest genes properly

131

sunnyosun

2022-08-16

โœจ New readout table, registered species

130

sunnyosun

2022-08-12

๐Ÿšš Migrate bioreader to bioreadout

129

sunnyosun

2022-08-04

โฌ†๏ธ Upgrade to lndb_setup 0.5.0

128

falexwolf

2022-08-03

โฌ†๏ธ Upgrade to lnschema_core 0.3.0

127

falexwolf

2022-08-03

๐Ÿšš Renamed meta.annotate to db.link

126

sunnyosun

2022-08-03

๐Ÿ‘ท Cleaner CI environment switching

125

falexwolf

2022-08-02

0.2.1

โฌ†๏ธ Upgrade to lndb_setup 0.4.2

123

falexwolf

2022-08-02

0.2.0

๐Ÿ“ Polish the introspect tutorial

122

falexwolf

2022-08-02

๐Ÿ“ Polish the 4 key tutorial pages

121

falexwolf

2022-08-02

๐Ÿ“ Polish get-started & select-data

119

falexwolf

2022-08-01

โœจ Allow ingesting fcs files and selecting genes

118

sunnyosun

2022-08-01

๐Ÿ“ Prettify user mentions in guide & faq

117

falexwolf

2022-08-01

โฌ†๏ธ Upgrade to lndb_setup 0.4.0

116

falexwolf

2022-08-01

๐ŸŽจ Overhauled guide, renamed load to select.table_as_df

115

sunnyosun

2022-08-01

๐Ÿฉน Some fixes of ingesting in-memory dobjects and an analysis draft

114

falexwolf

2022-07-31

โœจ Select and update metadata

113

sunnyosun

2022-07-31

๐Ÿ“ Add a problem statement

112

falexwolf

2022-07-31

โฌ†๏ธ Upgrade to lamindb-schema 0.3.1

111

falexwolf

2022-07-31

๐Ÿšง Annotate features during ingestion

110

sunnyosun

2022-07-31

๐Ÿ“ Re-write landing page

109

falexwolf

2022-07-30

๐Ÿ“ Improve get-started and collaborate guide

108

falexwolf

2022-07-30

โฌ†๏ธ Upgrade to lnschema_core 0.2.0

106

falexwolf

2022-07-29

๐Ÿšš Move out lndb_hub

105

falexwolf

2022-07-29

โ™ป๏ธ Refactor sharing on the hub

104

falexwolf

2022-07-29

โœจ Enable sharing dobjects & instances in the hub

69

fredericenard

2022-07-29

๐Ÿ”ฅ Moved readout vocab to bioreader

103

sunnyosun

2022-07-28

โฌ†๏ธ Upgrade lndb_setup to 0.3.0

102

falexwolf

2022-07-26

โฌ†๏ธ Upgrade to lndb-cli 0.2.0

101

falexwolf

2022-07-25

๐Ÿšš Account for table construction in lndb-cli

99

falexwolf

2022-07-25

๐Ÿšš Move CLI code to lndb-cli

98

falexwolf

2022-07-24

๐Ÿฑ Adapted to lnschema-biology 0.1.1

97

sunnyosun

2022-07-24

๐Ÿšธ Let the CLI have actual subcommands

96

falexwolf

2022-07-24

๐Ÿ‘ท Add time out to GitHub Actions

93

Koncopd

2022-07-23

๐Ÿ”ฅ Switched logger to use lamin-logger

92

sunnyosun

2022-07-23

โœจ Annotate biometa when annotating genes

90

sunnyosun

2022-07-23

๐Ÿ”ผ Upgrade to schema 0.2.1

89

falexwolf

2022-07-23

๐ŸŽจ Use modular schema structure

88

falexwolf

2022-07-22

๐Ÿšš Move db API from admin to dev

87

falexwolf

2022-07-22

โœจ Enable annotating features of dobjects

81

sunnyosun

2022-07-22

๐Ÿšธ Offer manual way of completing a migration

86

falexwolf

2022-07-22

๐Ÿ—๏ธ Separate settings into user vs. instance and one file per instance

83

fredericenard

2022-07-22

๐Ÿ› Fix loading of multi-index and non-id tables

85

falexwolf

2022-07-21

0.1.2

๐Ÿšš Rename table interface to jupynb: migrate to schema v0.1.1

84

falexwolf

2022-07-21

๐Ÿšš Move version check into correct init

82

falexwolf

2022-07-20

โฌ†๏ธ Fix the publishing call by upgrading to nbproject 0.4.3

80

falexwolf

2022-07-19

0.1.1

โœจ Add schema_version check

79

falexwolf

2022-07-19

0.1.0

๐Ÿšš Rename lamindb.model to laminln.schema

77

falexwolf

2022-07-17

๐Ÿšš Migrate schema out to lamindb-schema

76

falexwolf

2022-07-17

โœจ Version dobjects and interfaces

75

falexwolf

2022-07-16

๐Ÿ’„ Pretty logging

74

sunnyosun

2022-07-15

โœจ Add ingest.add and ingest.commit

73

sunnyosun

2022-07-14

๐Ÿ“ Add an example of ingesting images

72

sunnyosun

2022-07-12

โฌ†๏ธ Upgrade to nbproject 0.2.1

71

falexwolf

2022-07-12

๐Ÿ› Fix bug

70

falexwolf

2022-07-12

๐Ÿ“ Added example notebook for ingesting fcs files

66

sunnyosun

2022-07-11

โฌ†๏ธ Migrate to nbproject 0.2.0

68

falexwolf

2022-07-11

๐Ÿšธ Auto-check integrity upon data ingestion only on Jupyter Lab

65

falexwolf

2022-07-09

0.0.9

๐Ÿšš Renamelndb config to lndb init and rewrite get-started

64

falexwolf

2022-07-09

๐Ÿšธ Raise error upon multiple sign ups with same unconfirmed email

63

falexwolf

2022-07-09

โœจ Allow sharing instances with other users

62

falexwolf

2022-07-08

๐Ÿ—๏ธ Improve configuration logic, flow, logging & testing

61

falexwolf

2022-07-08

โœจ Populate user metadata at sign up

60

fredericenard

2022-07-07

โœจ Unique user identity across instances

59

falexwolf

2022-07-06

๐Ÿšง Enable storing sqlite on S3

58

falexwolf

2022-07-04

0.0.8

๐Ÿšš Rename table file to dobject

57

falexwolf

2022-07-04

๐Ÿšš Rename CLI from lamindb to lndb

56

falexwolf

2022-07-04

โœจ Add instance_name to settings and instance to setup

55

falexwolf

2022-07-03

0.0.7

โ™ป๏ธ Refactor file storage

54

falexwolf

2022-07-03

0.0.6

โ™ป๏ธ Refactor settings

52

falexwolf

2022-07-02

0.0.5

๐Ÿ‘ท Switch to nbproject tests & clean up logging

51

falexwolf

2022-07-01

โœจ Use nbproject publish functionality

50

falexwolf

2022-07-01

๐Ÿšš Rename tutorial to guide

49

falexwolf

2022-06-29

๐Ÿ‘ท Measure coverage

48

sunnyosun

2022-06-26

๐Ÿ—๏ธ Settings: From pydantic BaseModel to custom class

46

falexwolf

2022-06-25

๐Ÿ—๏ธ Complete refactor of setup, settings & storage management

45

falexwolf

2022-06-25

โฌ†๏ธ Upgrade to nbproject 0.1a3

43

falexwolf

2022-06-23

๐Ÿ“ One-page layout for data models

42

falexwolf

2022-06-14

โ™ป๏ธ More explicit _id name for such fields

41

falexwolf

2022-06-14

โ™ป๏ธ Migrate from sql to sqm everywhere

40

falexwolf

2022-06-14

โœจ Implement data access log track.do

39

falexwolf

2022-06-12

0.0.4

๐Ÿ—๏ธ Re-organize API

38

falexwolf

2022-06-12

๐Ÿ—๏ธ Set up db with sqlmodel, test int ids

37

falexwolf

2022-06-11

๐Ÿ—๏ธ Re-designed entire API

36

falexwolf

2022-06-10

๐Ÿ”ฅ Remove notion integration up to CLI

35

falexwolf

2022-06-10

๐Ÿ“ Rename from lamindb to LaminDB & rewrite the landing page

34

falexwolf

2022-06-10

0.0.3

๐Ÿ—๏ธ Introduce field interface.type

31

falexwolf

2022-06-09

๐Ÿšš Rename global source table to interface

30

falexwolf

2022-06-09

โœจ Track python package dependencies in source.dependency

27

falexwolf

2022-06-09

โœจ Track title of ingesting notebook in source.name

26

falexwolf

2022-06-09

๐Ÿ› Fix user & notebook ingestion, add another test dataset

24

falexwolf

2022-06-08

โœ… Fix pandas load, add tests for converting between sqlcore & pandas, add tests for setup

23

falexwolf

โœจ Add introspection: db.diagram(), db.entities(), db.load()

22

falexwolf

โœจ Add entity user

21

falexwolf

๐Ÿšธ Auto-create local storage dir & cache dir

20

falexwolf

โœ… Add a test for db creation & file ingestion

18

falexwolf

๐Ÿ—๏ธ Name the database file like the storage root directory

17

falexwolf

โ™ป๏ธ Refactor lndb.db

16

falexwolf

๐Ÿ”ง Refactor lndb.settings

15

falexwolf

๐Ÿ”ฅ Remove versioneer

14

falexwolf

๐Ÿ‘ท Track changes as in cookiecutter-py 0.3.0

13

falexwolf

2022-06-07

๐Ÿ—๏ธ Basic file ingestion from a notebook

9

falexwolf

2022-06-06

๐Ÿ”ฅ Remove sqlmodel dependency

8

falexwolf

2022-06-04

๐Ÿ“„ Change format of license file

7

falexwolf

2022-05-23

๐Ÿ“ Fix faq link

6

falexwolf

2022-05-26

โ™ป๏ธ Update to cookiecutter 0.2.0

5

falexwolf

2022-05-23

๐Ÿ’„ More narrow sidebar

4

falexwolf

2022-05-11

๐Ÿ’„ Switch faq and api

3

falexwolf

2022-05-11

๐Ÿ“ Polish the documentation

2

falexwolf

2022-05-11

๐Ÿšš Migrated from lamin repository

1

falexwolf