lamindb

A data framework for biology.

Registries:

Artifact()	Artifacts: files and folders.
Collection()	Collections: collections of artifacts.
Transform()	Transformations of artifacts & collections.
Run()	Runs of transforms.
User()	Users.
Storage()	Storage locations.
ULabel()	Universal label ontology.
Feature()	Dimensions of measurement.
FeatureSet()	Jointly measured sets of features.

Key functionality:

connect(slug, *[, db, storage, ...])	Connect to instance.
track(*[, transform, new_run, path])	Track notebook or script run.
finish([i_saved_the_notebook])	Mark a tracked run as finished.
Annotate()	Annotation flow.
view([n, schema, registries])	View latest metadata state.
save(records[, ignore_conflicts])	Bulk save to registries & storage.

Modules & settings:

integrations	Integrations.
settings	Global Settings.
setup	Setup & configure LaminDB.
UPath(*args, **kwargs)	Paths: low-level key-value access to files/objects.
core	Core library.