lamindb.dev.datasets#

Small example datasets.

file_fcs()

Return fcs file example.

file_jpg_paradisi05()

Return jpg file example.

file_fastq()

Mini mock fastq file.

file_bam()

Mini mock bam file.

file_mini_csv()

Mini csv file.

dir_scrnaseq_cellranger()

Directory with exemplary scrnaseq cellranger input and output.

generate_cell_ranger_files(sample_name[, ...])

Generate mock cell ranger outputs.

df_iris()

The iris dataset as in sklearn.

anndata_mouse_sc_lymph_node()

Mouse lymph node scRNA-seq dataset from EBI.

anndata_human_immune_cells()

Cross-tissue immune cell analysis reveals tissue-specific features in humans.

anndata_pbmc68k_reduced()

Modified from scanpy.datasets.pbmc68k_reduced().

anndata_pbmc3k_processed()

Modified from scanpy.pbmc3k_processed().

anndata_with_obs()

Create a mini anndata with cell_type, disease and tissue.