Changelog#
Name |
PR |
Developer |
Date |
Version |
|---|---|---|---|---|
✨ Add |
2023-06-01 |
|||
🚑 Must pass a species when creating record from lookup |
2023-05-30 |
0.18.2 |
||
✨ Added |
2023-05-30 |
0.18.1 |
||
🚑 Fix created_by_id in Readout |
2023-05-28 |
0.18.0 |
||
🎨 Change .bionty to a method |
2023-05-28 |
|||
🚑 Default species to None and not pass to Bionty |
2023-05-27 |
0.18a6 |
||
🚑 Fix 0.18.0 sqlite migration script |
2023-05-27 |
|||
✨ Add |
2023-05-27 |
0.18a5 |
||
🚑 Fix table name for id_encoder |
2023-05-27 |
|||
⬆️ Update lamindb and bionty versions |
2023-05-27 |
|||
🏷️ Restored Optional type annotation |
2023-05-26 |
|||
🏗️ Remove SQL-level schema modules |
2023-05-25 |
0.18a2 |
||
🚑 Fix last migration |
2023-05-25 |
0.17.1 |
||
🍱 Add CreatedBy and CreatedAt to all entities |
2023-05-25 |
0.17.0 |
||
🚚 Rename bt.Entity to bt.Bionty |
2023-05-25 |
|||
⬆️ Upgrade to bionty 0.13 |
2023-05-09 |
0.16.4 |
||
✨ Added synonyms field to CellMarker |
2023-05-09 |
0.16.3 |
||
💚 Fix dependencies |
2023-04-27 |
0.16.2 |
||
🎨 Move ._entity to private |
2023-04-27 |
0.16.1 |
||
💥 Enable |
2023-04-24 |
0.16.0 |
||
⚡ Fix adding species |
2023-04-19 |
0.15.2 |
||
✨ Add ._entity to knowledge class for features parsing |
2023-04-18 |
0.15.1 |
||
🎨 New design of the knowledge API |
2023-04-17 |
0.15.0 |
||
♻️ Refactor knowledge |
2023-03-28 |
0.14.0 |
||
🐛 Fix import |
2023-03-27 |
0.13.1 |
||
✨ Added Readout |
2023-03-27 |
0.13.0 |
||
📝 Move knowledge guide from lamindb here |
2023-03-27 |
|||
⬆️ Updated bionty and lamindb deps |
2023-03-27 |
0.12.2 |
||
👷 Upgrade to latest cookiecutter |
2023-03-27 |
|||
🚑 Fix |
2023-03-25 |
0.12.1 |
||
♻️ Switch to class property |
2023-03-24 |
0.12.0 |
||
✨ Expose bionty functions with knowledge decorator |
2023-03-24 |
0.11.0 |
||
🐛 Fix Readout population |
2023-03-23 |
0.10.1 |
||
⬆️ Update CellMarker columns for bionty 0.10 |
2023-03-21 |
0.10.0 |
||
✨ Add CellLine, Pathway, Phenotype |
2023-03-21 |
0.9.0 |
||
💚 Fix CI |
2023-03-21 |
|||
⬆️ Upgrade to bionty 0.9.0 |
2023-03-20 |
0.8.1 |
||
🎨 Allow hashing external IDs |
2023-03-10 |
|||
⬆️ Stable release of bionty 0.8.0 |
2023-03-09 |
0.8.0 |
||
⬆️ Bionty>=0.8rc3 |
2023-03-09 |
0.8rc2 |
||
✨ Use ontology_id as the id for Tissue, CellType, Disease |
2023-03-07 |
0.8.0rc1 |
||
⬆️ Upgrade bionty |
2023-03-06 |
|||
🔥 Remove migration files |
2023-02-14 |
0.7.0 |
||
⬆️ Upgrade and rename |
2023-02-14 |
0.6.9 |
||
🐛 Fixed taxon_id type |
2023-01-17 |
0.6.8 |
||
⬆️ Upgrade dependencies |
2023-01-17 |
0.6.7 |
||
⏪ Revert the last PR |
2023-01-17 |
|||
🐛 Fixed typo for postgres |
2023-01-16 |
0.6.6 |
||
🎨 Change |
2023-01-13 |
|||
👷 Extend CI to py3.8-3.10 |
2023-01-12 |
|||
🚚 Rename |
2023-01-05 |
|||
🐛 Fix migration for sqlite |
2023-01-05 |
0.6.5 |
||
♻️ Treat link tables as in all other schema modules |
2023-01-05 |
0.6.4 |
||
🚚 Move knowledge version tables into module |
2023-01-05 |
0.6.3 |
||
🧪 Added test for ontology autopopulate |
2022-12-09 |
|||
✅ Add migrations test |
2022-12-08 |
|||
✨ Added bionty_version table |
2022-12-07 |
0.6.2 |
||
🎨 Updated bionty_versions |
2022-12-05 |
|||
✨ Added |
2022-11-18 |
0.6.1 |
||
🏗️ Introduce relationships, move Features table to core |
2022-11-17 |
0.6.0 |
||
⚡ Implemented knowledge as a decorator |
2022-11-11 |
0.5.4 |
||
✨ Added populator for ontologies |
2022-11-11 |
|||
♻️ Refactor knowledge population |
2022-11-06 |
|||
🐛 Fixed postgres migration script |
2022-11-06 |
0.5.3 |
||
✨ Use bionty to populate species |
2022-11-06 |
0.5.2 |
||
🐛 Fix prefix |
2022-11-03 |
0.5.1 |
||
🎨 Modularize and capitalize |
2022-11-03 |
0.5.0 |
||
🎨 Updated cell marker id gen |
2022-10-25 |
0.4.5 |
||
✏️ Updated species id to be 3 chars |
2022-10-24 |
0.4.4 |
||
🧑💻 Added naming convention |
2022-10-20 |
|||
🩹 Fix type annotations of primary keys |
2022-09-29 |
0.4.3 |
||
✏️ Changed ids to str |
2022-09-29 |
0.4.2 |
||
🍱 Added |
2022-09-27 |
0.4.1 |
||
🚚 Update primary keys to universal ids |
2022-09-22 |
0.4.0 |
||
🚚 Rename column in version table, add testdb, and migration script |
2022-09-22 |
0.3.1 |
||
✨ Add migrations infra |
2022-09-22 |
0.3.0 |
||
🩹 Added unique constraints |
2022-09-22 |
|||
🐛 Fixed API ref |
2022-09-06 |
0.2.4 |
||
🎨 Import additional modules, species -> species_id |
2022-08-28 |
0.2.3 |
||
🚚 Rename gene_symbol to symbol, protein_name to name |
2022-08-28 |
0.2.2 |
||
⬆️ Update schema to match bionty 0.2.0 |
2022-08-28 |
0.2.1 |
||
🚚 Rename |
2022-08-19 |
0.2.0 |
||
🔧 Add schema module id |
2022-08-18 |
|||
🍱 Updated the gene table to match new ensembl table |
2022-08-18 |
0.1.4 |
||
🎨 Changed type of |
2022-08-15 |
0.1.3 |
||
🚚 Move |
2022-07-31 |
|||
✨ Introduced featureset to replace geneset and proteinset |
2022-07-31 |
0.1.2 |
||
🎨 Changed |
2022-07-23 |
0.1.1 |
||
🚚 Move code from |
2022-07-23 |
0.1.0 |