lnschema_bionty.CellLine#
- class lnschema_bionty.CellLine(name: str, ontology_id: Optional[str], abbr: Optional[str], synonyms: Optional[str], description: Optional[str], parents: List[CellLine], bionty_source: Optional[BiontySource])#
- class lnschema_bionty.CellLine(*db_args)
Bases:
BioRegistry
Cell lines - Cell Line Ontology.
Notes
For more info, see tutorial Manage biological registries
Bulk create CellLine records via
from_values
.Examples
>>> standard_name = lb.CellLine.bionty().standardize(["K562"])[0] >>> record = lb.CellLine.from_bionty(name=standard_name) ✅ validated 1 CellLine record from Bionty on name: K 562 cell >>> record CellLine(id=akITPKqK, name=K 562 cell, ontology_id=CLO:0007050, synonyms=K-562|KO|GM05372E|K.562|K562|GM05372|K 562, description=disease: leukemia, chronic myeloid, bionty_source_id=ls6p, created_by_id=DzTjkKse) # noqa >>> record.save()
Fields
- id CharField
A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.
- name CharField
Name of the cell line.
- ontology_id CharField
Ontology ID of the cell line.
- abbr CharField
A unique abbreviation of cell line.
- synonyms TextField
Bar-separated (|) synonyms that correspond to this cell line.
- description TextField
Description of the cell line.
- bionty_source ForeignKey
BiontySource
this cell line associates with.
- created_at DateTimeField
Time of creation of record.
- updated_at DateTimeField
Time of last update to record.
- created_by ForeignKey
Creator of record, a
User
.
- parents ManyToManyField
Parent cell line records.
- files ManyToManyField
Files linked to the cell line.
- datasets ManyToManyField
Datasets linked to the cell line.
Methods