lnschema_bionty.CellMarker#
- class lnschema_bionty.CellMarker(name: str, synonyms: Optional[str], gene_symbol: Optional[str], ncbi_gene_id: Optional[str], uniprotkb_id: Optional[str], organism: Optional[Organism], bionty_source: Optional[BiontySource])#
Bases:
BioRegistry
Cell markers - CellMarker.
Notes
Bulk create CellMarker records via
from_values
.Examples
>>> record = lb.CellMarker.from_bionty(name="PD1", organism="human")
Fields
- id AutoField
Internal id, valid only in one DB instance.
- uid CharField
A universal id (hash of selected field).
- name CharField
A wrapper for a deferred-loading field. When the value is read from this object the first time, the query is executed.
- synonyms TextField
Bar-separated (|) synonyms that correspond to this cell marker.
- gene_symbol CharField
Gene symbol that corresponds to this cell marker.
- ncbi_gene_id CharField
NCBI gene id that corresponds to this cell marker.
- uniprotkb_id CharField
Uniprotkb id that corresponds to this cell marker.
- organism ForeignKey
Organism
this cell marker associates with.
- bionty_source ForeignKey
BiontySource
this cell marker associates with.
- created_at DateTimeField
Time of creation of record.
- updated_at DateTimeField
Time of last update to record.
- created_by ForeignKey
Creator of record, a
User
.
- files ManyToManyField
Files linked to the cell marker.
- datasets ManyToManyField
Datasets linked to the cell marker.
- feature_sets ManyToManyField
Featuresets linked to this cell marker.
Methods