lnschema_bionty.ExperimentalFactor#
- class lnschema_bionty.ExperimentalFactor(name: str, ontology_id: Optional[str], abbr: Optional[str], synonyms: Optional[str], description: Optional[str], parents: List[ExperimentalFactor], bionty_source: Optional[BiontySource])#
Bases:
BioRegistryExperimental factors - Experimental Factor Ontology.
Notes
For more info, see tutorial Manage biological registries
Bulk create ExperimentalFactor records via
from_values.Examples
>>> standard_name = lb.ExperimentalFactor.bionty().standardize(["scRNA-seq"]) >>> record = lb.ExperimentalFactor.from_bionty(name=standard_name)
Fields
- id AutoField
Internal id, valid only in one DB instance.
- uid CharField
A universal id (hash of selected field).
- name CharField
Name of the experimental factor.
- ontology_id CharField
Ontology ID of the experimental factor.
- abbr CharField
A unique abbreviation of experimental factor.
- synonyms TextField
Bar-separated (|) synonyms that correspond to this experimental factor.
- description TextField
Description of the experimental factor.
- molecule TextField
Molecular experimental factor, parsed from EFO.
- instrument TextField
Instrument used to measure the experimental factor, parsed from EFO.
- measurement TextField
Phenotypic experimental factor, parsed from EFO.
- bionty_source ForeignKey
BiontySourcethis experimental_factors associates with.
- created_at DateTimeField
Time of creation of record.
- updated_at DateTimeField
Time of last update to record.
- created_by ForeignKey
Creator of record, a
User.
- parents ManyToManyField
Parent experimental factor records.
- files ManyToManyField
Files linked to the experimental_factors.
- datasets ManyToManyField
Datasets linked to the experimental factor.
Methods