lnschema_bionty.Pathway

class lnschema_bionty.Pathway(name: str, ontology_id: Optional[str], abbr: Optional[str], synonyms: Optional[str], description: Optional[str], parents: List[Pathway], bionty_source: Optional[BiontySource])

Bases: BioRegistry

Pathways - Gene Ontology, Pathway Ontology.

Notes

For more info, see tutorial Manage biological registries

Bulk create Pathway records via from_values.

Examples

>>> record = lb.Pathway.from_bionty(ontology_id="GO:1903353")
>>> record.save()

Fields

id AutoField

Internal id, valid only in one DB instance.

uid CharField

A universal id (hash of selected field).

name CharField

Name of the pathway.

ontology_id CharField

Ontology ID of the pathway.

abbr CharField

A unique abbreviation of pathway.

synonyms TextField

Bar-separated (|) synonyms that correspond to this pathway.

description TextField

Description of the pathway.

bionty_source ForeignKey

BiontySource this pathway associates with.

created_at DateTimeField

Time of creation of record.

updated_at DateTimeField

Time of last update to record.

created_by ForeignKey

Creator of record, a User.

parents ManyToManyField

Parent pathway records.

genes ManyToManyField

Genes that signifies the pathway.

feature_sets ManyToManyField

Featuresets linked to the pathway.

files ManyToManyField

Files linked to the pathway.

datasets ManyToManyField

Datasets linked to the pathway.

Methods