lnschema_bionty.Protein#
- class lnschema_bionty.Protein(name: Optional[str], uniprotkb_id: Optional[str], synonyms: Optional[str], length: Optional[int], gene_symbol: Optional[str], ensembl_gene_ids: Optional[str], organism: Optional[Organism], bionty_source: Optional[BiontySource])#
Bases:
BioRegistry
Proteins - Uniprot.
Notes
Bulk create Protein records via
from_values
.Examples
>>> record = lb.Protein.from_bionty(name="Synaptotagmin-15B", organism="human") >>> record = lb.Protein.from_bionty(gene_symbol="SYT15B", organism="human")
Fields
- id AutoField
Internal id, valid only in one DB instance.
- uid CharField
A universal id (hash of selected field).
- name CharField
Unique name of a protein.
- uniprotkb_id CharField
UniProt protein ID, 6 alphanumeric characters, possibly suffixed by 4 more.
- synonyms TextField
Bar-separated (|) synonyms that correspond to this protein.
- length BigIntegerField
Length of the protein sequence.
- gene_symbol CharField
The primary gene symbol corresponds to this protein.
- ensembl_gene_ids TextField
Bar-separated (|) Ensembl Gene IDs that correspond to this protein.
- organism ForeignKey
Organism
this protein associates with.
- bionty_source ForeignKey
BiontySource
this protein associates with.
- created_at DateTimeField
Time of creation of record.
- updated_at DateTimeField
Time of last update to record.
- created_by ForeignKey
Creator of record, a
User
.
- files ManyToManyField
Files linked to the protein.
- datasets ManyToManyField
Datasets linked to the protein.
- feature_sets ManyToManyField
Featuresets linked to this protein.
Methods