xenium-to-zarr.ipynb · laminlabs/lamindata

xenium-to-zarr.ipynb

Convert Xenium outputs to SpatialData

sunnyosun

Runs

hbgpHm8j

Completed

19.31s

Ran 2 years ago by

Input	Output
register-xenium-outs.ipynb samples/xenium/2.0.0/Xenium_V1_humanLung_Cancer_FFPE/Xenium_V1_humanLung_Cancer_FFPE_outs.zip oXPf27QR (7.99 GB) samples/xenium/2.0.0/Xenium_V1_humanLung_Cancer_FFPE/Xenium_V1_humanLung_Cancer_FFPE_he_image.ome.tif Mio8wpIg (1.19 GB) samples/xenium/2.0.0/Xenium_V1_humanLung_Cancer_FFPE/Xenium_V1_humanLung_Cancer_FFPE_he_imagealignment.csv QJoGe0AL (126 B)	spatialdata_xenium_humanlungcancer.ipynb 3 save_vitessce_config xenium_usecase_draft.ipynb blog/spatialdata/better-effect.ipynb xenium/2.0.0/Xenium_V1_humanLung_Cancer_FFPE_outs.sdata.zarr 8sPWscz3 (6.95 GB)

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