Changelog#

0.54#

0.54.2 2023-09-26#

0.54.1 2023-09-21#

0.54.0 2023-09-17#

0.53 2023-09-09#

0.52#

0.52.2 2023-09-05#

0.52.1 2023-09-02#

0.52.0 2023-09-01#

0.51#

0.51.3 2023-08-30#

0.51.2 2023-08-28#

0.51.1 2023-08-28#

0.51.0 2023-08-24#

0.50#

0.50.1 2023-08-17#

0.50.0 2023-08-07#

0.49#

0.49.3 2023-08-04#

  • πŸ”§ Eliminate index files & upper bound pydantic and other core dependencies by major versions PR981 @falexwolf

0.49.2 2023-08-03#

0.49.1 2023-08-01#

  • 🎨 Allow passing QuerySet to .features.add_labels() PR969 @sunnyosun

  • ⚑️ Speed up & remove auto-generation of feature name PR963 @falexwolf

0.49.0 2023-07-31#

  • ✨ Add a progress monitoring to file.load() and file.stage() PR959 @Koncopd

  • 🚚 Rename Registry.select() to Registry.filter() PR958 @falexwolf

  • 🚚 Rename Feature.label_orms to Feature.registries PR957 @falexwolf

  • ♻️ Aggregate ref_field, ref_orm, ref_schema into ref_field PR955 @falexwolf

  • 🎨 Move feature foreignkey from label to link between label and file PR954 @falexwolf

  • 🎨 Enable file/dataset-external feature sets PR953 @falexwolf

0.48 2023-07-26#

0.47 2023-07-10#

0.46 2023-07-06#

Features:

  • ✨ Enable hierarchical metadata, e.g., cell types, tissues, etc. PR810 @sunnyosun

  • ✨ Add Dataset & Feature ORMs, e.g., easily track column names of dataframes PR805 @falexwolf

Breaking changes:

UX:

  • ✨ Globally set species via lb.settings.species= PR142 falexwolf

  • 🚚 Easy display of many-to-many fields: QuerySet.df(include=[field__name]) PR832 @falexwolf

  • 🚸 Create new run if notebook is run by different user PR838 @falexwolf

  • 🚸 Speed up bulk saving of records PR828 @sunnyosun

  • 🚸 Hash large files faster PR836 @falexwolf

  • ✨ Add from_df and from_anndata to File PR844 @falexwolf

  • 🚸 Return locally backed object instead of cloud backed if available PR840 @falexwolf

  • 🚸 Raise more & more user-friendly errors in setup API when instance already setup PR837 @falexwolf

  • 🚸 Better error behavior when no notebook title set in ln.track() PR834 @Koncopd

  • 🚸 Store hash for remote files on S3 PR808 @falexwolf

0.45 2023-06-27#

0.44#

0.44.2 2023-06-23#

0.44.1 2023-06-22#

0.44.0 2023-06-20#

Features:

  • 🚸 Idempotency across metadata records & data artifacts FAQ PR783 @falexwolf

  • ✨ add_synonym & map_synonyms to enable, e.g., add_synonym("MyGeneName") PR786 @sunnyosun

  • ✨ Backed access for general HDF5 and zarr objects PR781 @Koncopd

Refactors:

0.43.0 2023-06-15#

Features:

  • ✨ Enable Registry.search() and improved Registry.lookup() PR771 @sunnyosun

  • 🎨 Consolidate lnschema_bionty and upgrade to latest Bionty PR775 @sunnyosun

  • 🚸 Introduce ln.settings.storage to switch default storage PR773 @falexwolf

  • 🚸 Return existing file if hash exists (idempotency) PR772 @falexwolf

  • 🚸 ln.settings can now change logging verbosity levels PR630 @falexwolf

Refactors:

0.42.0 2023-06-14#

This is the first release after migrating from SQLModel/SQLAlchemy to Django.

With this, we’re hopeful that we get closer to a production-ready 1.0.0 API.

Highlights:

  • More robust & simpler automated migrations: lamin migrate create & lamin migrate deploy

  • Simpler query syntax (no joins anymore): ln.File.select(transform__created_by=user)

  • No need to create a session object to load relationships: access file.transform to load a Transform object

  • No need to write out link models in schemas & generally simplified schema syntax

  • Any schema package (lnschema_myschema) is now managed as minimal Django app

Breaking changes:

  • Renamed ln.Features to ln.FeatureSet and is now typically instantiated with FeatureSet.from_iterable()

  • Removed ln.Session

  • Removed .join() (replaced SelectStmt with QuerySet)

  • .all() now returns a QuerySet and no longer a list (use .list() instead)

  • Access Bionty objects within lnschema_bionty via Registry.bionty() instead of Registry.bionty

  • Removed File.stream() as all functionality is now provided through File.backed()

  • Many-to-many fields are now set with Run.inputs.set() and appended with Run.inputs.add()

Non-breaking changes:

  • Vastly simplified dependencies & introduced configurable installation

  • Auto-generated storage keys are now of the form lndb/{id}.{suffix} rather than just {id}.{suffix}

  • Renamed ln.add() to ln.save()

  • Introduced Registry.select(), Registry.save(), and Registry.delete()

  • Better tracking & linking of Bionty sources in lnschema_bionty

Additional notes:

  • Consolidated docs and auto-generate upon push events to lamindb main

  • Consolidated submodules (renamed lndb to lamindb-setup, removed lndb-storage)

The main downsides of migrating to Django are:

  • Currently only one LaminDB instance loadable per Python session

  • Type hints & constructor signatures are less pythonic (SQLModel uses less magic than Django) and lead to idiosyncrasies in model definition (nullable defaults) and validation (validation at the Registry-level is more manual as Django foresees validation at the Form level)

  • SQLAlchemy provides the more powerful Registry, and there might be future use cases that will require them

Complete list of changes below.

Name

PR

Developer

Date

Version

♻️ Use TransformType

763

falexwolf

2023-06-13

πŸ‘· Dispatch to lamin-examples & redun-lamin-fasta

762

falexwolf

2023-06-13

πŸ”₯ Remove File.stream()

761

falexwolf

2023-06-13

0.42a9

🚸 Prefix auto-storage-key with lndb/

757

falexwolf

2023-06-12

✨ Delete storage in File.delete()

754

Koncopd

2023-06-12

βœ… Add more tests for File init

755

falexwolf

2023-06-12

πŸ’š Remove test paths from pyproject.toml

753

falexwolf

2023-06-11

✨ Add to_adata() method to AnnDataAccessor

752

Koncopd

2023-06-11

🚚 Rename Featureset to FeatureSet

750

sunnyosun

2023-06-10

⚠️ Refactor save - it no longer returns records

742

falexwolf

2023-06-10

πŸ“ Re-organize biology guides

740

falexwolf

2023-06-10

✨ Populate bionty_version in ln.parse

739

sunnyosun

2023-06-09

0.42a8

⚑ Improved multifield query in ln.parse

736

sunnyosun

2023-06-09

⬆️ First stable Django release of lnschema-bionty

733

sunnyosun

2023-06-09

🚸 Validate required fields

735

falexwolf

2023-06-09

πŸ“ Integrate lnschema_bionty into reference

732

falexwolf

2023-06-08

0.42a7

🚸 Add select method to BaseORM

730

falexwolf

2023-06-08

πŸ“ Overhaul README

728

falexwolf

2023-06-08

♻️ Refactored features code

731

sunnyosun

2023-06-08

πŸ“ Add configure guide instead of setup

727

falexwolf

2023-06-08

πŸ§ͺ Add tests for folder.tree()

726

sunnyosun

2023-06-08

🚚 Renamed BiontyVersions to BiontySource

725

sunnyosun

2023-06-07

πŸ”Š folder.tree can only be used with existing folders in storage

724

sunnyosun

2023-06-07

πŸ‘· Coverage in separate job

722

falexwolf

2023-06-07

🎨 Import ORMs from .models before reload

723

sunnyosun

2023-06-07

πŸ”₯ Remove ln.nb

721

falexwolf

2023-06-07

πŸ—οΈ Re-architect transform id

720

falexwolf

2023-06-06

0.42a6

🚚 Rename ln.add to ln.save

719

falexwolf

2023-06-05

0.42a5

⬆️ Upgrade lnschema-core to 0.35a5

718

sunnyosun

2023-06-05

🚚 Migrate lnschema-bionty to Django

716

falexwolf

2023-06-05

0.42a2

♻️ Polish core schema

717

falexwolf

2023-06-05

πŸ› Fix delete for File

715

Koncopd

2023-06-04

πŸ“ Rework the stream notebook

714

Koncopd

2023-06-04

πŸ’š Point to lamindb-setup main & fix session

713

falexwolf

2023-06-04

βž– Move nbproject to extra dependencies

711

Koncopd

2023-06-04

πŸ”₯ Delete SQLAlchemy related content

710

falexwolf

2023-06-04

βž• Pin boto3 in aws

712

Koncopd

2023-06-04

πŸ”₯ Remove SQLAlchemy tests

709

falexwolf

2023-06-04

♻️ Absorb DjangoORM.create() in DjangoORM.__init__()

707

falexwolf

2023-06-03

πŸ› Disentangle keys in storage related test notebooks

708

Koncopd

2023-06-03

🚸 ln.track improvements

704

Koncopd

2023-06-03

πŸ—οΈ Enable Django backend (part 2)

702

falexwolf

2023-06-02

🎨 Simplified track sample-level metadata

705

sunnyosun

2023-06-02

πŸ”Š Add more loggings to ln.parse

703

sunnyosun

2023-06-02

0.42a1

♻️ Refactored feature parsing and ln.parse

701

sunnyosun

2023-06-01

🚚 Move lndb-storage back into lamindb

700

falexwolf

2023-06-01

🚚 Rename lndb to lamindb_setup

699

falexwolf

2023-06-01

πŸ—οΈ Add Django backend (setup)

697

falexwolf

2023-05-31

⬆️ Update lndb to 0.45.0

698

Koncopd

2023-05-31

0.41.2

⬆️ Upgrade lnschema-bionty

696

sunnyosun

2023-05-30

0.41.1

πŸš‘ Fix species config

695

sunnyosun

2023-05-28

0.41.0

🎨 Clean up CI more

694

falexwolf

2023-05-28

βž– Remove scanpy as test dependency

693

falexwolf

2023-05-28

πŸ‘· Fix coverage for lndb-storage

692

falexwolf

2023-05-28

βž– Do not install storage extras by default

691

Koncopd

2023-05-28

0.41a4

πŸ‘· Bring back nox session

690

falexwolf

2023-05-28

πŸ“ Refactor guide notebooks

689

falexwolf

2023-05-28

✨ Add DataFrame support for ln.parse

688

sunnyosun

2023-05-28

πŸ‘· Refactor tests

687

falexwolf

2023-05-27

✨ Subsettable backed AnnData

668

Koncopd

2023-05-27

πŸ“ Remove setup notebook

686

falexwolf

2023-05-27

πŸ—οΈ Remove SQL-level schema modules

685

falexwolf

2023-05-26

0.41a3

⬆️ Upgrade lnschema-bionty to 0.17.1

684

sunnyosun

2023-05-25

0.40.7

⬇️ Downgrade lnschema-bionty to 0.16.5

683

sunnyosun

2023-05-25

0.40.6

♻️ Refactor types

681

falexwolf

2023-05-23

0.40.5

♻️ Refactor BaseORM

679

falexwolf

2023-05-17

🚸 Pre-join some cheap relationships

678

falexwolf

2023-05-16

πŸ“ Improve wording

677

Zethson

2023-05-16

✨ Added Treatment table

675

sunnyosun

2023-05-15

0.40.3

πŸš‘ Fix ln.Features table name for postgres

674

sunnyosun

2023-05-11

0.40.1

πŸ“ Update ontology guide

673

falexwolf

2023-05-11

🎨 Deprecated data in ln.Features, replace with iterable

672

sunnyosun

2023-05-11

🎨 Replace reference with field for ln.Features Breaking

671

sunnyosun

2023-05-09

0.40.0

⬆️ Update bionty to 0.13

670

sunnyosun

2023-05-09

0.39.8

πŸ“ Polish

667

falexwolf

2023-04-28

πŸ“ Polish docs

666

falexwolf

2023-04-28

⬆️ Update to lndb 0.44.7

665

sunnyosun

2023-04-28

0.39.7

🚸 Do not require session for is_run_input

664

falexwolf

2023-04-28

0.39.6

⬆️ Allow load with storage

663

sunnyosun

2023-04-27

0.39.5

πŸ’₯ Switch to methods bionty.df(), bionty.lookup() Breaking

662

sunnyosun

2023-04-27

0.39.4

⬆️ Upgrade lndb

661

fredericenard

2023-04-26

0.39.3

✨ Enable database entries lookup

660

sunnyosun

2023-04-24

0.39.2

✨ Introduce File.backed()

659

falexwolf

2023-04-24

✨ Introduced ln.parse()

658

sunnyosun

2023-04-24

0.39.1

🎨 Refactor ln.File

657

falexwolf

2023-04-24

0.39.0

✨ Inherit fsspec kwargs from root and move in root check

655

Koncopd

2023-04-23

πŸ“Œ Check anndata version in File.subset

commit

Koncopd

2023-04-23

πŸ› Fix VS Code notebook reinitialization in track

654

Koncopd

2023-04-23

🚸 Add File.subset

653

falexwolf

2023-04-22

0.39rc1

🚚 Replace lnschema-wetlab with lnbase-biolab and lnschema-lamin1

651

falexwolf

2023-04-22

πŸ“ Add an export example for ln.schema.view()

649

falexwolf

2023-04-21

πŸ› Fix population of transform_id in File in edge cases

648

falexwolf

2023-04-21

0.38.3

🚸 Allow registering local postgres instances on the hub

647

falexwolf

2023-04-21

0.38.2

🚸 Improve error message for notebook tracking

643

falexwolf

2023-04-19

van -> can

641

ThomVett

2023-04-19

⚑ Improved feature parsing speed

640

sunnyosun

2023-04-19

0.38.1

⬆️ Compatibility with new hub

639

falexwolf

2023-04-18

0.38.0

πŸ’₯ New calling patterns for lnschema-bionty

633

falexwolf

2023-04-18

βœ… Use nbproject-test directly

638

Koncopd

2023-04-18

🚸 Use relative path in key

636

falexwolf

2023-04-18

0.37.2

🩹 Unpack notebook_path correctly

632

Koncopd

2023-04-17

0.37.1

🚚 Better names, more relationships directly on File Breaking

631

falexwolf

2023-04-16

0.37.0

✨ Add Google Colab integration

628

falexwolf

2023-04-16

🚸 Improve notebook tracking UX

627

falexwolf

2023-04-14

🎨 Simplify ln.track() and add app transform type

624

falexwolf

2023-04-12

0.36.3

πŸ› Fix initialization of new notebooks

623

Koncopd

2023-04-10

0.36.1

🚸 Filename in File.name, new File.key and Folder.key, robustness overhaul Breaking

614

falexwolf

2023-04-08

0.36.0

✨ Introduce File.stage() and File.replace()

611

Koncopd

2023-04-03

0.35.6

🚸 More robust ontology version tracking

605

Zethson

2023-04-01

🚚 Import lnschema_bionty instead of bionty

591

sunnyosun

2023-03-28

0.35.5

🚚 Move all core entities to root level

590

falexwolf

2023-03-27

0.35.4

🚸 Polish guide

589

falexwolf

2023-03-27

0.35.3

🚚 Move Readout from lnschema-wetlab to lnschema-bionty

588

sunnyosun

2023-03-27

0.35.2

♻️ Fix parsing_id

587

sunnyosun

2023-03-27

0.35.1

🚚 Rename DObject to File and DFolder to Folder Breaking

586

falexwolf

2023-03-25

0.35.0

🚚 Introduce ln.track() to replace ln.nb.header()

585

falexwolf

2023-03-24

πŸ—οΈ Combine Notebook and Pipeline into Transform Breaking

584

falexwolf

2023-03-23

πŸš‘ Fix optional dependencies

583

sunnyosun

2023-03-22

0.34.2

πŸ”₯ Remove Usage

581

falexwolf

2023-03-22

⬆️ Updated CellMarker asset

578

sunnyosun

2023-03-21

0.34.1

⬆️ Upgrade to bionty 0.9

575

sunnyosun

2023-03-20

0.34.0

♻️ Move storage-related code to lndb-storage

560

Koncopd

2023-03-20

πŸš‘ Fix gene id

573

sunnyosun

2023-03-17

πŸ› Check if env variable exists before trying to get his value

572

fredericenard

2023-03-15

🚸 Do not yet show deprecation warning for ln.nb.header()

commit

falexwolf

2023-03-15

0.33.4

πŸ‘· Restore streaming test from cloud

569

sunnyosun

2023-03-15

0.33.3

⬇️ typeguard<3.0.0

568

sunnyosun

2023-03-15

βž– Remove typeguard dependency

567

sunnyosun

2023-03-15

0.33.2

⬆️ Update core

566

sunnyosun

2023-03-15

0.33.1

🚚 Replace ln.nb.header() with ln.Run() except in faq/nb

564

falexwolf

2023-03-14

0.33.0

🚸 Smart about global_context and load_latest when run from notebook

563

falexwolf

2023-03-14

✨ ln.Features

562

sunnyosun

2023-03-14

πŸ—οΈ Introduce lamindb.context and enable ln.Run to create contexts

561

falexwolf

2023-03-13

πŸ“ Improve the docstrings of ln.save and ln.delete

559

sunnyosun

2023-03-10

πŸ“ Hide CI related cells in notebooks

558

sunnyosun

2023-03-10

πŸ“ Update docs to clarify sign up and log in

557

lawrlee

2023-03-10

πŸ“ Prettier species query

555

falexwolf

2023-03-09

0.32.0

πŸ“ Refactor docs sidebar

553

sunnyosun

2023-03-09

⬆️ Upgrade ln.setup

554

falexwolf

2023-03-09

πŸ”₯ Remove ln.knowledge Breaking

552

sunnyosun

2023-03-09

βž– Remove bionty as a dependency

551

sunnyosun

2023-03-09

0.32.0rc1

πŸ“ Replace ln.knowledge with bionty in docs

547

falexwolf

2023-03-07

0.31.1

πŸ“ Link FAQ and guide to session and notebook API

550

falexwolf

2023-03-07

⬆️ Upgrade lndb

549

fredericenard

2023-03-07

0.31.0

⬆️ Upgrade lndb

548

fredericenard

2023-03-07

πŸ“ Move ingest-folder back to faq

545

falexwolf

2023-03-06

🚸 Improve clarity of no_source error message

543

falexwolf

2023-03-06

πŸ’š Fix CI

542

sunnyosun

2023-03-06

🚚 Rename data objects to data or datasets in titles

541

sunnyosun

2023-03-06

πŸ“ Duplicate README to the guide landing page

540

sunnyosun

2023-03-06

✨ Allow uploading zarr from local paths

539

Koncopd

2023-03-05

πŸ“ Prettify guide landing page

537

sunnyosun

2023-03-05

πŸš‘ Fix upsert for dobject and CI

535

sunnyosun

2023-03-03

0.30.3

πŸ’„ Simplify docs

534

falexwolf

2023-03-03

🚸 Do not error, just warn upon installation of lamin

533

falexwolf

2023-03-02

0.30.2

πŸš‘ Fix iterdir to not list itself

532

sunnyosun

2023-03-02

πŸ”₯ Remove lamin dependency

531

falexwolf

2023-03-01

0.30.1

πŸš‘ Fix for listing cloud dir

528

sunnyosun

2023-03-01

0.30.0

🎨 Add lamindb.setup API as an alternative for the CLI

530

falexwolf

2023-03-01

🚚 Rename dfolder.get_dobject to get, allow passing a subdirectory

527

sunnyosun

2023-03-01

πŸš‘ Ensure filepath is absolute

526

sunnyosun

2023-03-01

🎨 Allow passing a list of relpaths to dfolder.get_dobject

524

sunnyosun

2023-02-28

✨ Infer filesystem for anndata read and write

522

Koncopd

2023-02-25

πŸ“ Replace lndb with lamin in docs

521

falexwolf

2023-02-25

0.29.1

πŸ“ Add nbproject note box to ingest guide

520

bpenteado

2023-02-24

🍱 DFolder.get_dobject

519

sunnyosun

2023-02-24

⬆️ Upgrade lnschema-core to 0.28.6

517

bpenteado

2023-02-23

0.29.0

πŸ’₯ Move lns.DFolder to ln.DFolder

510

sunnyosun

2023-02-23

πŸ› Fix trailing slash within lamindb

516

falexwolf

2023-02-22

0.28.5

πŸ‘· Fix CI config

515

falexwolf

2023-02-22

0.28.4

πŸ› Fix version check

514

falexwolf

2023-02-22

0.28.3

πŸ‘· Collect docs artifacts

513

falexwolf

2023-02-22

0.28.2

πŸ› Fix trailing slash in storage root

512

falexwolf

2023-02-22

0.28.1

🚚 Rename DObject.run_id to DObject.source_id

509

falexwolf

2023-02-21

0.28.0

πŸ› Another occurance of local filepath

508

falexwolf

2023-02-21

πŸ‘· Better CI and better arg validation

505

falexwolf

2023-02-21

πŸ› Fix tracking local existing data

506

falexwolf

2023-02-21

πŸš‘ Fix parents for existing data ingestion

504

sunnyosun

2023-02-21

🎨 Disable multiple select results for .add and .delete by fields

502

sunnyosun

2023-02-20

0.28rc1

⚑️ Replace CloudPath with UPath

501

Koncopd

2023-02-19

πŸ‘· Move fixtures from nox to conftest

500

falexwolf

2023-02-17

πŸ“ Simplify output for dfolder faq

499

sunnyosun

2023-02-17

πŸ“ Guide to ingest a folder

496

sunnyosun

2023-02-17

πŸš‘ Fix determination of sqlite vs postgres

497

falexwolf

2023-02-17

0.27.2

🎨 Improve lndb (lamindb manager) architecture

495

falexwolf

2023-02-16

0.27.1

🚸 Add relationship between DFolder and DObject

494

bpenteado

2023-02-16

✨ Confirm dialog for deleting data from storage

493

sunnyosun

2023-02-16

✨ Ingest existing data from configured local storage

491

sunnyosun

2023-02-16

🚸 Proper client server check for lndb

492

falexwolf

2023-02-16

⬆️ Upgrade nbproject to 0.8.2

490

bpenteado

2023-02-16

⬆️ Upgrade and rename lndb_setup to lndb (v0.32.4) Breaking

487

bpenteado

2023-02-14

0.27.0

πŸš‘ Fix tracking of added records during ln.save()

489

bpenteado

2023-02-13

✨ Added is_run_input param to DObject.load()

488

sunnyosun

2023-02-13

🎨 Added ln.settings.track_run_inputs_upon_load

486

sunnyosun

2023-02-13

🎨 Added zarr tests back and cleaned up faq

485

sunnyosun

2023-02-13

πŸ”₯ Drop populating runin and tracking usage upon load

484

sunnyosun

2023-02-13

🚸 Better ln.nb.header() auto-retrieval error message

483

falexwolf

2023-02-09

🚸 Make DObject upload ACID

476

bpenteado

2023-02-08

πŸ“ Add notebook on Registry lazy loading behavior to FAQ

472

bpenteado

2023-02-06

🎨 Robust generation of DObject._filekey

481

sunnyosun

2023-02-06

0.26.1

🎨 Added erroring behavior when file doesn’t exist for ln.delete

480

sunnyosun

2023-02-06

πŸ“ Removed extra fields in dev.datasets.pbmc68k

479

sunnyosun

2023-02-06

βž– Removed lnbfx and fix CI

478

sunnyosun

2023-02-06

πŸ“ Query book

470

sunnyosun

2023-02-06

🩹 Print dobject name for zarr upload

475

Koncopd

2023-02-02

πŸ› Fix load

474

Koncopd

2023-02-02

πŸ”₯ Disable Registry relationship preview

473

bpenteado

2023-02-02

✨ Allow ingesting existing data in the cloud

471

sunnyosun

2023-02-02

πŸ› Correct filepath in header

469

Koncopd

2023-02-01

🚸 Add post-setup settings manager, error on duplicate insert Breaking

466

falexwolf

2023-02-01

0.26.0

πŸ› Fix fallback for notebook name

463

falexwolf

2023-01-30

0.25.7

πŸ”₯ Remove lns.DObject Breaking

462

sunnyosun

2023-01-30

⬆️ Upgrade lndb-setup 0.30.11

461

sunnyosun

2023-01-30

0.25.6

⬆️ Cleaned up dependencies so that it’s not as redundant to lndb-setup

460

sunnyosun

2023-01-27

βž• Bring back lnfbx

459

falexwolf

2023-01-26

0.25.5

πŸ“ Prettier section headings in the docs

456

sunnyosun

2023-01-26

πŸ“Œ Pin s3fs and gcsfs to the latest versions

458

falexwolf

2023-01-26

0.25.4

🚸 Auto-populate relationship-associated foreign key fields

457

bpenteado

2023-01-26

0.25.3

πŸ› Fix strict type checking for relationships

455

bpenteado

2023-01-24

0.25.2

🩺 Increase migrations testing robustness postgres

454

falexwolf

2023-01-24

πŸ“ Remove linked-select notebook

453

falexwolf

2023-01-24

⬆️ Upgrade lnschema-core to 0.25.1

452

bpenteado

2023-01-23

0.25.1

✨ Add explicit remote sqlite instance locking to write operations

447

Koncopd

2023-01-23

♻️ Refactored FAQ

448

sunnyosun

2023-01-23

πŸ“ Create data validation FAQ

451

bpenteado

2023-01-23

βž– Remove s3fs dependency

450

fredericenard

2023-01-23

⬆️ Upgrade lndb-setup to 0.30.8

449

fredericenard

2023-01-23

🩹 Better treat edge cases upon signup, login, failed instance loading

446

falexwolf

2023-01-20

0.25.0

🚸 Introduce data validation on the Registry level

445

bpenteado

2023-01-20

♻️ Reorganize quickstart and get-started

444

sunnyosun

2023-01-20

πŸ“ Refactor init guide and show bionty versions in guide

443

sunnyosun

2023-01-18

0.24.6

⬆️ Upgrade wetlab schema to 0.13.3

442

sunnyosun

2023-01-17

0.24.5

πŸ› Fix taxon_id type and upgrade bionty

441

sunnyosun

2023-01-17

0.24.4

⬆️ Upgrade to lnschema-bionty 0.6.7

440

sunnyosun

2023-01-17

⬆️ Upgrade to lndb-setup 0.30.6

439

sunnyosun

2023-01-16

0.24.3

⬆️ Upgrade to lndb_setup==0.30.5

438

sunnyosun

2023-01-16

0.24.2

⬆️ Upgrade lndb-setup to 0.30.4

437

sunnyosun

2023-01-16

0.24.1

⬆️ Upgrade to lndb-setup 0.30.2

436

falexwolf

2023-01-16

0.24.0

🚸 Better hash exception

434

falexwolf

2023-01-12

🚸 Safer session behavior 2/2 Breaking

432

falexwolf

2023-01-12

0.23.0

πŸ‘· Extend CI to py3.8-3.10

431

sunnyosun

2023-01-12

0.22.5

🚸 Safer session behavior 1/2

430

falexwolf

2023-01-11

⬆️ Upgrade lndb-setup

428

fredericenard

2023-01-10

πŸ“ Re-arrange notebooks

427

falexwolf

2023-01-09

🚸 Make ln.nb.header() more robust

426

falexwolf

2023-01-09

0.22.4

πŸ“ Improving wording of definitions

424

falexwolf

2023-01-08

πŸ“ Fixes for lndocs upgrade

423

falexwolf

2023-01-08

♻️ Refactor guide

422

sunnyosun

2023-01-08

⬆️ Upgrade lnschema-bionty to 0.6.5

421

falexwolf

2023-01-05

0.22.3

⬆️ Upgrade to lndb-setup 0.28.1

420

falexwolf

2023-01-05

Fix typos

418

Zethson

2023-01-02

πŸ› Fix bugs in lndb set & lndb info

415

falexwolf

2022-12-22

0.22.2

βœ… Error behavior for ingest

414

falexwolf

2022-12-20

🎨 Simplify

413

sunnyosun

2022-12-16

⬆️ Upgrade lndb-setup

412

falexwolf

2022-12-16

0.22.1

🚸 Better CLI & logging

411

falexwolf

2022-12-15

0.22.0

⬆️ Updated setup

409

sunnyosun

2022-12-15

0.21.5

🚸 Make nb.run and nb.notebook public

408

falexwolf

2022-12-14

⬆️ Upgrade wetlab

407

bpenteado

2022-12-13

0.21.4

⬆️ Upgrade lndb-setup

405

falexwolf

2022-12-13

0.21.3

⬆️ Upgrade lndb-setup

404

sunnyosun

2022-12-13

0.21.2

⬆️ Upgrade lndb-setup

403

falexwolf

2022-12-12

0.21.1

πŸ“ Fix docs

402

falexwolf

2022-12-09

🎨 Integrate ln.record into lns.DObject β†’ ln.DObject

400

sunnyosun

2022-12-09

0.21.0

⬆️ Upgrade setup, core & wetlab schema

398

falexwolf

2022-12-08

0.20.0

πŸ”₯ Drop all logic related to dynamic settings

397

fredericenard

2022-12-08

⬆️ Upgrade wetlab

395

bpenteado

2022-12-06

0.19.4

⬆️ Upgrade wetlab

394

bpenteado

2022-12-06

0.19.3

⬆️ Upgrade wetlab

393

sunnyosun

2022-12-06

0.19.2

πŸ› Fix view

392

falexwolf

2022-12-05

0.19.1

🎨 Enable inheriting wetlab schemas

391

falexwolf

2022-12-05

0.19.0

βœ… Better tests for features hashing

390

falexwolf

2022-12-04

⬆️ Upgrade lndb-setup

389

fredericenard

2022-12-04

0.18.9

✨ Check duplication before inserting records

387

sunnyosun

2022-11-30

0.18.8

🚸 Do not autoflush upon select

386

falexwolf

2022-11-30

0.18.7

πŸ› Fix bug in schema module name lookup

384

falexwolf

2022-11-29

⬆️ Updated wetlab

383

sunnyosun

2022-11-29

0.18.6

⬆️ Upgrade lnschema-core and lndb-setup

382

falexwolf

2022-11-28

0.18.5

✨ Improve lazy selectors

375

Koncopd

2022-11-28

⬆️ Update wetlab schema

381

sunnyosun

2022-11-28

0.18.4

⬆️ Upgrade wetlab schema

380

sunnyosun

2022-11-28

0.18.3

⬆️ Upgrade lndb-setup & lnschema-core

379

fredericenard

2022-11-28

0.18.2

⬆️ Upgrade lndb-setup to 0.18.1

378

falexwolf

2022-11-25

πŸ”₯ Removed bioreadout

373

sunnyosun

2022-11-24

0.18.1

✨ Add lazy selectors to ln.subset

370

Koncopd

2022-11-23

πŸ—οΈ Persist the session

372

falexwolf

2022-11-23

⬆️ Upgrade lndb-setup

371

fredericenard

2022-11-23

✨ Add subset function for dobjects

368

Koncopd

2022-11-23

0.18.0

🎨 Drop Biometa

369

falexwolf

2022-11-22

🎨 Simplify schema module handling

367

falexwolf

2022-11-22

πŸ“ Bring back guide to linking sample-level metadata

365

falexwolf

2022-11-21

0.17.0

πŸ“ Add flow example back to main guide

363

falexwolf

2022-11-21

πŸ“ Update schema

362

falexwolf

2022-11-21

🩹 Restore default fsspec for upload

361

Koncopd

2022-11-20

🎨 Prettify API

359

falexwolf

2022-11-18

πŸ› Also return existing features

358

falexwolf

2022-11-18

πŸ“ Fix select gene doc

357

falexwolf

2022-11-18

πŸ—οΈ Refactor ingest

356

falexwolf

2022-11-17

✨ Knowledge guide

353

sunnyosun

2022-11-16

🎨 Separate nb.publish from ingest.commit

355

falexwolf

2022-11-16

0.16.0

πŸ› Fix data source

354

falexwolf

2022-11-15

🚚 Move storage key to core schema

352

falexwolf

2022-11-14

0.15.0

πŸ› Fixed species_id in bio entity tables

351

sunnyosun

2022-11-14

✨ Initialize Jupynb run upon nb.header()

350

falexwolf

2022-11-12

0.14.0

πŸ—οΈ Aggregate Run and DTransform

349

falexwolf

2022-11-12

⬆️ Updated bionty

348

sunnyosun

2022-11-11

πŸ“ Make notebook for link_features

347

falexwolf

2022-11-11

0.13.0

✨ Join dataframes

345

falexwolf

2022-11-10

✨ Fields in join

344

falexwolf

2022-11-10

βœ… Add tests for zarr ingest and load

342

Koncopd

2022-11-10

🚚 Rename PipelineRun to Run

343

falexwolf

2022-11-10

πŸ› Fix view

341

falexwolf

2022-11-09

0.12.1

🚚 Rename view arg

340

falexwolf

2022-11-09

0.12.0

πŸ“ Refactor select notebooks

339

falexwolf

2022-11-08

πŸ“ Simplify arg in link

338

falexwolf

2022-11-08

♻️ Refactor select

337

falexwolf

2022-11-08

⬆️ Update to bionty==0.5.3

334

sunnyosun

2022-11-06

🚚 Rename entries to records in link

333

sunnyosun

2022-11-04

πŸ“ Improve guide

332

falexwolf

2022-11-04

🎨 Migrate to the new schema modules

331

falexwolf

2022-11-04

0.11.0

πŸ”₯ Removed link_biometa

330

sunnyosun

2022-11-03

🎨 Removed get, re-organized API docs

329

sunnyosun

2022-11-03

🚚 Move .db API to root level

328

sunnyosun

2022-11-03

🚚 Remove A prefix from notebooks

327

falexwolf

2022-11-03

✨ Storage related features

322

Koncopd

2022-11-03

🎨 Simplify generating records

326

sunnyosun

2022-11-02

πŸ› Fixed bug in linking features

325

sunnyosun

2022-11-01

🍱 Added anndata_mouse_sc_lymph_node

324

sunnyosun

2022-11-01

🚚 Rename schema._table.Table to table_meta

323

sunnyosun

2022-11-01

🎨 Added LinkFeatureToKnowledgeTable

320

sunnyosun

2022-10-31

⬆️ Update lndb setup

321

fredericenard

2022-10-27

0.10.0

⬆️ Pinned bionty version

319

sunnyosun

2022-10-26

⬆️ Updated to lnschema_bionty 0.4.4

317

sunnyosun

2022-10-24

πŸ”₯ Remove lndb-hub import

318

fredericenard

2022-10-24

✨ Enable to get metadata from InstanceSettingsStore

310

fredericenard

2022-10-24

πŸ“ Rename row to record when not yet added to the DB

316

falexwolf

2022-10-23

⬆️ Update lndb hub version

315

fredericenard

2022-10-23

🎨 Replace insert and update with add

308

falexwolf

2022-10-22

⬆️ Upgrade lnbfx to 0.4.5

311

bpenteado

2022-10-22

πŸ“ Update postgres faq notebook

314

bpenteado

2022-10-22

🚚 Moved the rds notebooks to rnd-demo repo

309

sunnyosun

2022-10-21

✨ Added ln.link to populate link tables given two table entries

307

sunnyosun

2022-10-21

πŸ”₯ Remove hub import

301

fredericenard

2022-10-21

🎨 Overhaul select and add get

300

falexwolf

2022-10-21

🩹 Skip nc_evolutions table created by nocodb

302

sunnyosun

2022-10-21

✨ Added knowledge module

299

sunnyosun

2022-10-20

⬆️ Upgrade wetlab schema

297

sunnyosun

2022-10-20

0.9.6

⬆️ Added dset and project tables to core

296

sunnyosun

2022-10-19

0.9.5

🩹 Fixed rds nbs

295

sunnyosun

2022-10-18

πŸ“ Add prisma examples and implementation ideas

294

fredericenard

2022-10-18

♻️ Refactor linked select

286

sunnyosun

2022-10-18

0.9.4

✏️ Fix typo in link table entry fetching

292

bpenteado

2022-10-17

πŸ› Fixed link via link tables

291

sunnyosun

2022-10-15

0.9.3

✨ Add an option to use fsspec for upload

288

Koncopd

2022-10-15

✨ Load returns filepath if no in-memory format is found

287

sunnyosun

2022-10-13

0.9.2

🎨 Clean up dtransform_in

commit

falexwolf

2022-10-13

0.9.1

🎨 Continue overhaul

285

falexwolf

2022-10-13

0.9.0

🎨 Refactor linking dobjects & base64 encode checksum

283

falexwolf

2022-10-13

πŸ› View only prints existing tables

284

sunnyosun

2022-10-12

✨ Added db.view, rename schema.draw to schema.view

282

sunnyosun

2022-10-12

0.8.3

⬆️ Added bioreadout lookup to guide

281

sunnyosun

2022-10-12

🚚 Rename query to select

280

falexwolf

2022-10-12

🩹 Fix out of sync db warning

279

Koncopd

2022-10-12

✨ Add streaming zarr write and streaming h5ad and zarr read

277

Koncopd

2022-10-12

πŸ’„ Cosmetics

276

falexwolf

2022-10-12

♻️ Refactor ingest & insert

273

falexwolf

2022-10-11

✨ Compute checksum during ingest

274

fredericenard

2022-10-11

🚚 Moved bfx ingestion to faq

272

sunnyosun

2022-10-11

⬆️ Upgrade to lndb_setup 0.12.0

271

falexwolf

2022-10-10

0.8.2

πŸ“ Improved ingest guides, fixed linked entry bugs

270

sunnyosun

2022-10-10

πŸ› Fixed dobject_biometa entry insertion

269

sunnyosun

2022-10-10

0.8.1

πŸ“ Update test users in docs

268

falexwolf

2022-10-10

⬆️ Upgrade lndb_setup to 0.11.0 and nbproject to 0.7.0

267

falexwolf

2022-10-10

0.8.0

🎨 insert.from_list accepts entries

266

sunnyosun

2022-10-10

⬆️ Upgrade nbproject version to 0.5.5

265

Koncopd

2022-10-10

⬆️ Upgrade lndb_setup version to 0.10.1

264

fredericenard

2022-10-10

πŸ“ Improved docs of ingest, reorganized file structure

262

sunnyosun

2022-10-10

0.7.2

πŸ’₯ Refactor ingest, new pipeline ingestion logic, postgres test

257

sunnyosun

2022-10-08

0.7.1

πŸ“ Overhauled get-started

259

falexwolf

2022-10-07

🚸 Check for existence before deletion

258

falexwolf

2022-10-07

🎨 Make ingest a static class

256

sunnyosun

2022-10-07

0.7.0

⬆️ Upgrade to core schema 0.10.0

255

falexwolf

2022-10-07

✨ New ingest API

254

sunnyosun

2022-10-05

0.6.0

πŸ“ Overhaul documentation

253

falexwolf

2022-10-05

πŸ”§ Update lndb setup to 0.9.4

252

fredericenard

2022-10-04

πŸ”§ Enable setup outside cli

250

fredericenard

2022-10-04

⬆️ Upgrade lndb_setup and bionty

249

falexwolf

2022-10-03

0.5.0 0.5.0

🚸 Check for migrations upon import

247

falexwolf

2022-10-03

πŸ”Š Raise warnings for unpopulated columns from insert.from_df

248

sunnyosun

2022-10-03

⬆️ Upgrade lndb_setup to 0.8.3

246

fredericenard

2022-10-03

♻️ Inherit IngestObject and IngestPipelineRun from IngestEntity

243

bpenteado

2022-10-01

0.4.1

⬆️ Upgrade to lnschema_core 0.9.0

241

falexwolf

2022-09-30

🎨 Add type annotation to ingest

240

sunnyosun

2022-09-30

♻️ Generalize pipeline ingestion

237

bpenteado

2022-09-30

✨ Added one_or_none, fixed api links

238

sunnyosun

2022-09-29

🎨 Get db metadata as a dictionary

233

fredericenard

2022-09-29

🎨 Added .df() as an option to return select results

236

sunnyosun

2022-09-29

⬆️ Upgrade pkg versions

234

sunnyosun

2022-09-29

🚸 Test notebook integrity before anything else

232

falexwolf

2022-09-26

πŸ“ Add a quickstart & update ingest

231

falexwolf

2022-09-26

πŸ“ Update bfx ingestion demo

227

bpenteado

2022-09-26

🚚 Rename insert.features to insert.featureset_from_features

230

sunnyosun

2022-09-26

πŸ“ Polish documentation

229

falexwolf

2022-09-26

✨ Populate dobject size

228

falexwolf

2022-09-26

🚸 Sort select results in DataFrame by source

226

falexwolf

2022-09-25

⬆️ Upgrade to core schema 0.7.3

223

falexwolf

2022-09-25

🩹 Removed logging for inserting link tables

221

sunnyosun

2022-09-24

✨ Ingest bfx outputs with sample metadata

215

bpenteado

2022-09-24

πŸ‘· Improve notebook test function

218

falexwolf

2022-09-23

🧱 Improved code infra

216

sunnyosun

2022-09-23

0.4.0

✨ Account for multiple filepath suffixes

214

falexwolf

2022-09-23

♻️ Refactored feature model ingestion

213

sunnyosun

2022-09-23

♻️ Refactored insert

211

sunnyosun

2022-09-22

⬆️ Upgrade lndb_setup and lnschema_bionty

212

falexwolf

2022-09-22

⬆️ Upgrade to core schema 0.7.2

208

falexwolf

2022-09-21

πŸš‘ dtransform is either pipeline_run or jupynb

207

sunnyosun

2022-09-21

0.3.11

πŸ› Fixed column mapping

206

sunnyosun

2022-09-19

0.3.10

✨ Allow batch insertion

205

sunnyosun

2022-09-19

♻️ Refactored linked queries

204

sunnyosun

2022-09-15

⬆️ Update lnbfx to 0.3.5

199

bpenteado

2022-09-14

0.3.9

πŸ”Š Refactor pipeline logging

197

bpenteado

2022-09-14

0.3.8

✨ Insert unmapped features

198

sunnyosun

2022-09-14

♻️ Refactored linked queries

196

sunnyosun

2022-09-13

⬆️ Updated wetlab schema

195

sunnyosun

2022-09-13

♻️ Refactor pipeline logging

193

bpenteado

2022-09-13

0.3.7

⬆️ Updated lnbfx version

194

sunnyosun

2022-09-12

0.3.6

🍱 Updated cell ranger test dir

192

sunnyosun

2022-09-12

πŸ› Fix synchronization error in load

191

Koncopd

2022-09-12

⬆️ Updated setup version

189

sunnyosun

2022-09-08

0.3.5

♻️ Split ingestion logic into IngestObject and IngestPipeline

188

bpenteado

2022-09-06

πŸ“ Add flow data ingestion example

186

sunnyosun

2022-09-06

πŸ’„ Added sidebar to guide

185

sunnyosun

2022-09-06

♻️ Split pipeline ingestion from non-pipeline ingestion

183

bpenteado

2022-09-06

⬆️ Updated schema module versions

184

sunnyosun

2022-09-06

♻️ Refactored select

182

sunnyosun

2022-09-05

🚚 Rename return_df to as_df in select

181

sunnyosun

2022-09-05

🚚 Rename guides to faq & tutorials to guide

180

falexwolf

2022-09-05

♻️ Refactored guide

179

sunnyosun

2022-09-03

πŸ“ Prettify documentation

178

falexwolf

2022-09-02

Update lndb_hub version

176

fredericenard

2022-09-01

✨ Allow selecting dobjects by biological entities

175

sunnyosun

2022-09-01

0.3.4

⬆️ Update to sqm 0.0.8 to silence the warnings

174

sunnyosun

2022-08-30

🀑 R&D team simulation

172

sunnyosun

2022-08-30

🚸 Fix pipeline ingestion logging

158

bpenteado

2022-08-30

🚚 Move problems page to lamin-profile

171

falexwolf

2022-08-30

🩹 Uncomment out sharing tests

168

fredericenard

2022-08-30

πŸ”₯ Removed examples dir

170

sunnyosun

2022-08-30

🚸 Improve delete function

169

falexwolf

2022-08-30

🎨 Remove track submodule, move session, rename biogram to erdiagram

167

falexwolf

2022-08-29

🚚 Rename .do to .db

166

falexwolf

2022-08-29

🎨 Move header call to nb, re-export all of nbproject

165

falexwolf

2022-08-29

πŸ‘· Get rid of sqm warnings

164

falexwolf

2022-08-29

🎨 Simplify loading data

163

falexwolf

2022-08-29

πŸ‘· Allow stripping notebooks, upgrade nbproject_test

162

falexwolf

2022-08-29

0.3.3

✨ Use cell_marker feature model for flow data

161

sunnyosun

2022-08-28

⬆️ Updated to bionty 0.2.2

160

sunnyosun

2022-08-28

⬆️ Updated to sqm 0.0.7

159

sunnyosun

2022-08-28

⬆️ Updated dependencies

157

sunnyosun

2022-08-28

⬆️ Upgrade to lnschema_core 0.5.1

156

falexwolf

2022-08-26

♻️ Update pipeline ingestion to lnschema_core 0.5.0

154

bpenteado

2022-08-26

🍱 Add scrnaseq cellranger dataset

151

bpenteado

2022-08-26

πŸ› Fix population of dtransform

155

falexwolf

2022-08-26

✨ Populate dtransform_in

153

falexwolf

2022-08-26

⬆️ Updated dependencies

152

sunnyosun

2022-08-26

0.3.2

♻️ Refactor lnbfx integration

149

bpenteado

2022-08-26

🚧 Temporary solution to extend modules

150

sunnyosun

2022-08-25

0.3.1

πŸ—οΈ Make tables within schema modules configurable

148

falexwolf

2022-08-25

0.3.0

✏️ Fixed typo in check versions

147

sunnyosun

2022-08-24

πŸ—οΈ Use id to reference storage

146

fredericenard

2022-08-23

🚚 Renamed FeatureModel to LinkFeatureModel

145

sunnyosun

2022-08-23

⬆️ Upgrade to lnbfx 0.2.0

144

falexwolf

2022-08-23

🚚 Renamed id to key in update and delete APIs

143

sunnyosun

2022-08-23

♻️ Cleaned up and added a mouse dataset

142

sunnyosun

2022-08-23

⬆️ Upgrade lndb-hub to v0.5.0

140

fredericenard

2022-08-23

πŸ’„ Added logging to update and delete

141

sunnyosun

2022-08-22

✨ Autogenerate select, update and delete

139

sunnyosun

2022-08-22

⬆️ Upgrade core schema to v0.4.0

138

falexwolf

2022-08-22

✨ Track storage root location

137

fredericenard

2022-08-22

🚚 Rename schema modules and bioinformatics module

136

falexwolf

2022-08-19

✨ Integrate bioinformatics pipline runs

133

bpenteado

2022-08-18

πŸ“ Updated docs

135

sunnyosun

2022-08-18

πŸ‘½ Adapt to lnschema-bionty 0.1.4

134

sunnyosun

2022-08-18

⚑ Ingest genes properly

131

sunnyosun

2022-08-16

✨ New readout table, registered species

130

sunnyosun

2022-08-12

🚚 Migrate bioreader to bioreadout

129

sunnyosun

2022-08-04

⬆️ Upgrade to lndb_setup 0.5.0

128

falexwolf

2022-08-03

⬆️ Upgrade to lnschema_core 0.3.0

127

falexwolf

2022-08-03

🚚 Renamed meta.annotate to db.link

126

sunnyosun

2022-08-03

πŸ‘· Cleaner CI environment switching

125

falexwolf

2022-08-02

0.2.1

⬆️ Upgrade to lndb_setup 0.4.2

123

falexwolf

2022-08-02

0.2.0

πŸ“ Polish the introspect tutorial

122

falexwolf

2022-08-02

πŸ“ Polish the 4 key tutorial pages

121

falexwolf

2022-08-02

πŸ“ Polish get-started & select-data

119

falexwolf

2022-08-01

✨ Allow ingesting fcs files and selecting genes

118

sunnyosun

2022-08-01

πŸ“ Prettify user mentions in guide & faq

117

falexwolf

2022-08-01

⬆️ Upgrade to lndb_setup 0.4.0

116

falexwolf

2022-08-01

🎨 Overhauled guide, renamed load to select.table_as_df

115

sunnyosun

2022-08-01

🩹 Some fixes of ingesting in-memory dobjects and an analysis draft

114

falexwolf

2022-07-31

✨ Select and update metadata

113

sunnyosun

2022-07-31

πŸ“ Add a problem statement

112

falexwolf

2022-07-31

⬆️ Upgrade to lamindb-schema 0.3.1

111

falexwolf

2022-07-31

🚧 Annotate features during ingestion

110

sunnyosun

2022-07-31

πŸ“ Re-write landing page

109

falexwolf

2022-07-30

πŸ“ Improve get-started and collaborate guide

108

falexwolf

2022-07-30

⬆️ Upgrade to lnschema_core 0.2.0

106

falexwolf

2022-07-29

🚚 Move out lndb_hub

105

falexwolf

2022-07-29

♻️ Refactor sharing on the hub

104

falexwolf

2022-07-29

✨ Enable sharing dobjects & instances in the hub

69

fredericenard

2022-07-29

πŸ”₯ Moved readout vocab to bioreader

103

sunnyosun

2022-07-28

⬆️ Upgrade lndb_setup to 0.3.0

102

falexwolf

2022-07-26

⬆️ Upgrade to lndb-cli 0.2.0

101

falexwolf

2022-07-25

🚚 Account for table construction in lndb-cli

99

falexwolf

2022-07-25

🚚 Move CLI code to lndb-cli

98

falexwolf

2022-07-24

🍱 Adapted to lnschema-biology 0.1.1

97

sunnyosun

2022-07-24

🚸 Let the CLI have actual subcommands

96

falexwolf

2022-07-24

πŸ‘· Add time out to GitHub Actions

93

Koncopd

2022-07-23

πŸ”₯ Switched logger to use lamin-utils

92

sunnyosun

2022-07-23

✨ Annotate biometa when annotating genes

90

sunnyosun

2022-07-23

πŸ”Ό Upgrade to schema 0.2.1

89

falexwolf

2022-07-23

🎨 Use modular schema structure

88

falexwolf

2022-07-22

🚚 Move db API from admin to dev

87

falexwolf

2022-07-22

✨ Enable annotating features of dobjects

81

sunnyosun

2022-07-22

🚸 Offer manual way of completing a migration

86

falexwolf

2022-07-22

πŸ—οΈ Separate settings into user vs. instance and one file per instance

83

fredericenard

2022-07-22

πŸ› Fix loading of multi-index and non-id tables

85

falexwolf

2022-07-21

0.1.2

🚚 Rename table interface to jupynb: migrate to schema v0.1.1

84

falexwolf

2022-07-21

🚚 Move version check into correct init

82

falexwolf

2022-07-20

⬆️ Fix the publishing call by upgrading to nbproject 0.4.3

80

falexwolf

2022-07-19

0.1.1

✨ Add schema_version check

79

falexwolf

2022-07-19

0.1.0

🚚 Rename lamindb.model to laminln.schema

77

falexwolf

2022-07-17

🚚 Migrate schema out to lamindb-schema

76

falexwolf

2022-07-17

✨ Version dobjects and interfaces

75

falexwolf

2022-07-16

πŸ’„ Pretty logging

74

sunnyosun

2022-07-15

✨ Add ingest.add and ingest.commit

73

sunnyosun

2022-07-14

πŸ“ Add an example of ingesting images

72

sunnyosun

2022-07-12

⬆️ Upgrade to nbproject 0.2.1

71

falexwolf

2022-07-12

πŸ› Fix bug

70

falexwolf

2022-07-12

πŸ“ Added example notebook for ingesting fcs files

66

sunnyosun

2022-07-11

⬆️ Migrate to nbproject 0.2.0

68

falexwolf

2022-07-11

🚸 Auto-check integrity upon data ingestion only on Jupyter Lab

65

falexwolf

2022-07-09

0.0.9

🚚 Renamelndb config to lndb init and rewrite get-started

64

falexwolf

2022-07-09

🚸 Raise error upon multiple sign ups with same unconfirmed email

63

falexwolf

2022-07-09

✨ Allow sharing instances with other users

62

falexwolf

2022-07-08

πŸ—οΈ Improve configuration logic, flow, logging & testing

61

falexwolf

2022-07-08

✨ Populate user metadata at sign up

60

fredericenard

2022-07-07

✨ Unique user identity across instances

59

falexwolf

2022-07-06

🚧 Enable storing sqlite on S3

58

falexwolf

2022-07-04

0.0.8

🚚 Rename table file to dobject

57

falexwolf

2022-07-04

🚚 Rename CLI from lamindb to lndb

56

falexwolf

2022-07-04

✨ Add instance_name to settings and instance to setup

55

falexwolf

2022-07-03

0.0.7

♻️ Refactor file storage

54

falexwolf

2022-07-03

0.0.6

♻️ Refactor settings

52

falexwolf

2022-07-02

0.0.5

πŸ‘· Switch to nbproject tests & clean up logging

51

falexwolf

2022-07-01

✨ Use nbproject publish functionality

50

falexwolf

2022-07-01

🚚 Rename tutorial to guide

49

falexwolf

2022-06-29

πŸ‘· Measure coverage

48

sunnyosun

2022-06-26

πŸ—οΈ Settings: From pydantic BaseModel to custom class

46

falexwolf

2022-06-25

πŸ—οΈ Complete refactor of setup, settings & storage management

45

falexwolf

2022-06-25

⬆️ Upgrade to nbproject 0.1a3

43

falexwolf

2022-06-23

πŸ“ One-page layout for data models

42

falexwolf

2022-06-14

♻️ More explicit _id name for such fields

41

falexwolf

2022-06-14

♻️ Migrate from sql to sqm everywhere

40

falexwolf

2022-06-14

✨ Implement data access log track.do

39

falexwolf

2022-06-12

0.0.4

πŸ—οΈ Re-organize API

38

falexwolf

2022-06-12

πŸ—οΈ Set up db with sqlmodel, test int ids

37

falexwolf

2022-06-11

πŸ—οΈ Re-designed entire API

36

falexwolf

2022-06-10

πŸ”₯ Remove notion integration up to CLI

35

falexwolf

2022-06-10

πŸ“ Rename from lamindb to LaminDB & rewrite the landing page

34

falexwolf

2022-06-10

0.0.3

πŸ—οΈ Introduce field interface.type

31

falexwolf

2022-06-09

🚚 Rename global source table to interface

30

falexwolf

2022-06-09

✨ Track python package dependencies in source.dependency

27

falexwolf

2022-06-09

✨ Track title of ingesting notebook in source.name

26

falexwolf

2022-06-09

πŸ› Fix user & notebook ingestion, add another test dataset

24

falexwolf

2022-06-08

βœ… Fix pandas load, add tests

23

falexwolf

✨ Add introspection: db.diagram(), db.entities(), db.load()

22

falexwolf

✨ Add entity user

21

falexwolf

🚸 Auto-create local storage dir & cache dir

20

falexwolf

βœ… Add a test for db creation & file ingestion

18

falexwolf

πŸ—οΈ Name the database file like the storage root directory

17

falexwolf

♻️ Refactor lndb.db

16

falexwolf

πŸ”§ Refactor lndb.settings

15

falexwolf

πŸ”₯ Remove versioneer

14

falexwolf

πŸ‘· Track changes as in cookiecutter-py 0.3.0

13

falexwolf

2022-06-07

πŸ—οΈ Basic file ingestion from a notebook

9

falexwolf

2022-06-06

πŸ”₯ Remove sqlmodel dependency

8

falexwolf

2022-06-04

πŸ“„ Change format of license file

7

falexwolf

2022-05-23

πŸ“ Fix faq link

6

falexwolf

2022-05-26

♻️ Update to cookiecutter 0.2.0

5

falexwolf

2022-05-23

πŸ’„ More narrow sidebar

4

falexwolf

2022-05-11

πŸ’„ Switch faq and api

3

falexwolf

2022-05-11

πŸ“ Polish the documentation

2

falexwolf

2022-05-11

🚚 Migrated from lamin repository

1

falexwolf