Changelog#
0.54#
0.54.2 2023-09-26#
๐จ Better implementation of
dataset.view_flow
PR1194 @sunnyosun
0.54.1 2023-09-21#
๐ Mute repetitive warning for saving parents PR1190 @sunnyosun
๐ Fix warning logging upon save PR1185 @sunnyosun
๐ฉน Better suffix handling PR1181 @falexwolf
0.54.0 2023-09-17#
โ๏ธ Fix views for interactive terminal PR1178 @sunnyosun
๐ธ Improve error message for conflicting storage keys PR1174 @falexwolf
โป๏ธ Add string levels PR1173 @falexwolf
โจ Add
reference
andreference_type
toDataset
,ULabel
PR1171 @sunnyosun๐ Add client fallbacks to lamindb-setup PR1172 @falexwolf
๐ Fix
view_parents()
when there are no parents PR1167 @sunnyosun๐ Turn on hint for tutorials PR1164 @sunnyosun
โก Speed up instance loading time & refactor lamindb-setup PR1163 @falexwolf
๐จ More validation for
File
creation, improve zarr backend PR1160 @Koncopd๐ฅ Remove
add_labels()
&get_labels()
PR1155 @falexwolf๐จ Increased search threshold to 90 PR1156 @sunnyosun
0.53 2023-09-09#
โป๏ธ Refactor hub client PR1150 @falexwolf
โจ Add
return_field
toLookup
PR1153 @sunnyosun๐ Silence download bar for <5MB bionty files PR1151 @sunnyosun
๐ Set default verbosity to warning PR1149 @sunnyosun
๐ Add
Data.labels
accessor, renameLabel
toULabel
PR1148 @sunnyosunโจ Allow create records from non-default bionty sources PR1147 @sunnyosun
๐ฅ Removed
get_by_feature
PR1145 @sunnyosun๐ Replace
get_feature_set
with.feature_sets.__getitem__
PR1141 @sunnyosun
0.52#
0.52.2 2023-09-05#
๐จ Add labels to describe PR1139 @sunnyosun
๐จ Set default field for from_values PR1137 @sunnyosun
๐ More comprehensive landing page PR1136 @falexwolf
๐จ Switch to WRatio and default to limit=20 for search PR1135 @sunnyosun
๐ Rename
File.tree
toFile.view_tree
PR1133 @falexwolfโจ Enable dataset versioning PR1132 @falexwolf
0.52.1 2023-09-02#
โป๏ธ Refactor features display PR1129 @falexwolf
โป๏ธ Refactor feature set linking PR1128 @falexwolf
โป๏ธ Add display of numerical features PR1127 @falexwolf
๐ Rewrite landing page PR1126 @falexwolf
๐ธ Validate
Run
records PR1123 @falexwolf๐ Improved logging message for inspect PR1124 @sunnyosun
0.52.0 2023-09-01#
โป๏ธ Type features PR1121 @falexwolf
๐ธ Enable to pass modality to
from_df
andfrom_anndata
PR1116 @falexwolfโฌ๏ธ Cache instance id in settings files PR1120 @bpenteado
๐๏ธ Fix map_synonyms bug PR1119 @sunnyosun
๐ Fix
target_label
inview_parents
PR1118 @sunnyosunโป๏ธ Simplify
.standardize()
implementation PR1117 @sunnyosun๐ Fix
lookup()
forQuerySet
PR1115 @sunnyosun๐ฉน Replace deprecated
is_categorical_dtype
PR1114 @falexwolf
0.51#
0.51.3 2023-08-30#
๐ธ Better treatment of
File.suffix
PR1113 @falexwolf
0.51.2 2023-08-28#
โป๏ธ Enable typed feature sets for dataframes PR1110 @falexwolf
โก๏ธ Delete cached files for local instances on File.save() PR1109 @Koncopd
๐ Rename data lineage to data flow PR1108 @falexwolf
0.51.1 2023-08-28#
๐ Added
validate
guide PR1104 @sunnyosun๐ Fix feature set updates &
describe()
if no features are present PR1098 @falexwolf๐จ Make
species
not nullable inGene
,Protein
,CellType
PR1095 @sunnyosun
0.51.0 2023-08-24#
โป๏ธ Make
suffix
non-nullable and root unique PR1090 @falexwolfโป๏ธ Add
view_lineage
toDataset
PR1089 @falexwolf๐ธ Disable creating non-validated records with
from_values
PR1086 @sunnyosunโป๏ธ Enable passing AnnData-like
File
object toDataset.from_anndata
PR1085 @falexwolf๐ More consistent logging of inspect PR1081 @sunnyosun
๐ฅ Remove
inherit_relations
PR1079 @sunnyosunโป๏ธ Use
CanValidate
&HasParents
PR1078 @falexwolf๐ท Main is the new staging, release the new production branch PR1077 @falexwolf
โป๏ธ Refactor tutorial PR1076 @falexwolf
โป๏ธ Add
transform
,run
&input_of
toDataset
PR1074 @falexwolf๐ธ Better UX of graphviz installation PR1075 @sunnyosun
๐ท Run tutorial on anonymous worker PR1073 @falexwolf
โป๏ธ Use
create_path
PR1072 @falexwolf๐จ Make
from_values
synonyms aware,inspect
bionty aware PR1066 @sunnyosunโป๏ธ Use principled conversion to paths with options inheritance PR1069 @Koncopd
โป๏ธ Refactor storage PR1067 @falexwolf
๐ Fix tree view for anonymous access PR1065 @falexwolf
๐ฑ Add the Iris images dev dataset PR1062 @falexwolf
๐
Dataset.from_files
replaced with default constructor PR1060 @falexwolf๐ฑ Added
populate_registries
to some datasets PR1061 @sunnyosunโจ Add
get_feature_set
to.features
accessor PR1057 @sunnyosun๐ธ Allow
reference
&reference_type
params inln.track()
PR1053 @falexwolf
0.50#
0.50.1 2023-08-17#
โป๏ธ Refactor
run_context
PR1030 @falexwolf๐ธ Remove SA as a dependency and use delete dialogue PR1041 @falexwolf
๐ Move data lineage to use cases PR1026 @falexwolf
๐ธ Do not allow creating files with none of
key
,description
andrun
PR1022 @falexwolfโป๏ธ Introduce
ParentsAware
PR1023 @sunnyosunโป๏ธ Re-enable file versioning PR1014 PR1018 @falexwolf
๐ Fix validate logging PR1017 @sunnyosun
โจ Add
InspectResult
PR1012 @sunnyosun๐ Rename
map_synonyms()
tostandardize()
PR1046 @sunnyosun๐ Improved logging & visualizations PR1011 @sunnyosun
0.50.0 2023-08-07#
๐ธ Introduce Label validation PR1006 @falexwolf
๐ธ Turn
File.path()
into property PR1008 @falexwolf๐ฅ Remove backward compat for auto-keyed paths PR1007 @falexwolf
โจ Add
ValidationAware.validate()
PR1000 @sunnyosun๐ธ Increase default verbosity to hint-level PR1005 @falexwolf
โป๏ธ Better treatment of suffixes PR1004 @falexwolf
๐ฑ Add nf-core rna-seq test dataset PR1002 @falexwolf
๐ Move
add_labels
andget_labels
fromFeatureManager
toData
PR999 @falexwolf๐ Rename
FeatureSet.ref_field
toFeatureSet.registry
PR997 @falexwolf๐ธ Ignore
synonyms
infrom_values
to incentivize explicit curation process PR993 @falexwolf๐ Move
tutorial1
one level down PR989 @falexwolf๐ธ Only link validated features PR987 @falexwolf
๐ Move biology notebooks to
lamin-usecases
PR985 @sunnyosun๐ Improve API layout & description PR986 @falexwolf
๐ Rename
Manager
toQueryManager
PR984 @falexwolf๐ Rename
ORM
toRegistry
PR982 @sunnyosun
0.49#
0.49.3 2023-08-04#
๐ง Eliminate index files & upper bound pydantic and other core dependencies by major versions PR981 @falexwolf
0.49.2 2023-08-03#
โป๏ธ Refactor storage root management PR973 @falexwolf
๐จ Make
add_feature_set
acid PR980 @sunnyosun๐ Simplify tutorial PR977 @sunnyosun
๐ Account for
universal_pathlib
0.1 release PR976 @Koncopd
0.49.1 2023-08-01#
๐จ Allow passing
QuerySet
to.features.add_labels()
PR969 @sunnyosunโก๏ธ Speed up & remove auto-generation of feature name PR963 @falexwolf
0.49.0 2023-07-31#
โจ Add a progress monitoring to file.load() and file.stage() PR959 @Koncopd
๐ Rename
Registry.select()
toRegistry.filter()
PR958 @falexwolf๐ Rename
Feature.label_orms
toFeature.registries
PR957 @falexwolfโป๏ธ Aggregate ref_field, ref_orm, ref_schema into ref_field PR955 @falexwolf
๐จ Move feature foreignkey from label to link between label and file PR954 @falexwolf
๐จ Enable file/dataset-external feature sets PR953 @falexwolf
0.48 2023-07-26#
๐ Add MuData example PR945 @sunnyosun
๐จ Add
Modality
PR940 @falexwolf๐จ Describe based on provenance and features PR936 @sunnyosun
๐ธ Add
File.features
accessor:FeaturesManager
PR933 @falexwolf๐ Add spatial data example PR930 @falexwolf
โจ Added
with_children
toview_parents
PR921 @sunnyosun๐ Added comprehensive lineage graph example PR919 @sunnyosun
๐ Integrate
Project
andTag
intoLabel
PR914 @falexwolfโป๏ธ Replace
lamin_logger
withlamin_utils
PR912 @falexwolfโป๏ธ Replace
Run.name
withRun.reference_type
and more PR910 @falexwolfโจ Enable to create
File
outside default storage PR891 @falexwolfโจ Multi-field search PR898 @sunnyosun
โจ Better
Feature
management PR897 @falexwolf๐จ Make
ensembl_gene_id`` unique for
Gene` PR895 @sunnyosunโก Speed up file creation PR894 @falexwolf
๐ Rename
Readout
toExperimentalFactor
PR893 @sunnyosun๐จ
set_abbr
addsabbr
tosynonyms
PR892 @sunnyosun
0.47 2023-07-10#
โจ View parents PR858 @sunnyosun
โจ Track parent notebooks PR859 @falexwolf
๐ธ Improve data-lineage guide, auto-track run inputs PR869 @falexwolf
๐ธ More reliably detect interactive environments
ln.track()
PR878 @Koncopd๐ธ Case insensitive search PR877 @falexwolf
๐ธ Fix bug and add test for tracking multiple parent transforms PR875 @falexwolf
โจ Read remote h5ad in backed mode in
File.from_anndata
PR871 @falexwolfโก๏ธ Speed up search PR868 @falexwolf
โจ Added
File.inherit_relationships
PR867 @sunnyosunโจ Added
Manager.list()
and allow passing field name PR863 @sunnyosunโจ Added
.describe()
for rich repr of related objects PR862 @sunnyosunโจ Track
hash_type
PR861 @falexwolf๐ธ It should be possible to use a schema module prior to importing
lamindb
PR852 @falexwolfโจ Enable
search
,lookup
,inspect
,map_synonyms
fromQuerySet
PR849 @sunnyosun
0.46 2023-07-06#
Features:
โจ Enable hierarchical metadata, e.g., cell types, tissues, etc. PR810 @sunnyosun
โจ Add
Dataset
&Feature
ORMs, e.g., easily track column names of dataframes PR805 @falexwolf
Breaking changes:
๐ Rename
File.name
toFile.description
PR824 @falexwolf๐ Rename
File.featuresets
toFile.feature_sets
PR805 @falexwolf
UX:
โจ Globally set species via
lb.settings.species=
PR142 falexwolf๐ Easy display of many-to-many fields:
QuerySet.df(include=[field__name])
PR832 @falexwolf๐ธ Create new run if notebook is run by different user PR838 @falexwolf
๐ธ Speed up bulk saving of records PR828 @sunnyosun
๐ธ Hash large files faster PR836 @falexwolf
โจ Add
from_df
andfrom_anndata
toFile
PR844 @falexwolf๐ธ Return locally backed object instead of cloud backed if available PR840 @falexwolf
๐ธ Raise more & more user-friendly errors in setup API when instance already setup PR837 @falexwolf
๐ธ Better error behavior when no notebook title set in
ln.track()
PR834 @Koncopd๐ธ Store hash for remote files on S3 PR808 @falexwolf
0.45 2023-06-27#
โป๏ธ Replaced
ln.parse
withRegistry.from_values
PR803 @sunnyosun๐จ Auto-manage
RunInput
Registry PR802 @falexwolf
0.44#
0.44.2 2023-06-23#
โป๏ธ Make
zarr
optional PR800 @falexwolf
0.44.1 2023-06-22#
โจ Add
inspect
andadd_synonym
toRegistry
PR797 @sunnyosun๐ง Rename extra
nbproject
tojupyter
and addfcs
extra to docs PR798 @falexwolf๐ Move default storage location from
lndb/
to.lamindb/
PR796 @falexwolf๐ธ
ln.Folder
becomesln.Tag
& directories now modeled as prefixes (as on S3) PR794 @falexwolfโป๏ธ Refactor storage code PR792 @falexwolf @Koncopd
0.44.0 2023-06-20#
Features:
๐ธ Idempotency across metadata records & data artifacts FAQ PR783 @falexwolf
โจ
add_synonym
&map_synonyms
to enable, e.g.,add_synonym("MyGeneName")
PR786 @sunnyosunโจ Backed access for general HDF5 and zarr objects PR781 @Koncopd
Refactors:
๐ธ Return records list from
.from_bionty
for multiple matches PR789 @sunnyosun๐ Move logging from stderr to stdout PR776 @falexwolf
0.43.0 2023-06-15#
Features:
โจ Enable
Registry.search()
and improvedRegistry.lookup()
PR771 @sunnyosun๐จ Consolidate
lnschema_bionty
and upgrade to latest Bionty PR775 @sunnyosun๐ธ Introduce
ln.settings.storage
to switch default storage PR773 @falexwolf๐ธ Return existing file if hash exists (idempotency) PR772 @falexwolf
๐ธ
ln.settings
can now change logging verbosity levels PR630 @falexwolf
Refactors:
โป๏ธ Refactor core schema methods and storage access PR770 @falexwolf
๐ Make
User.name
nullable again PR769 @falexwolfโ Add integrity tests for migrations back PR768 @falexwolf
0.42.0 2023-06-14#
This is the first release after migrating from SQLModel/SQLAlchemy to Django.
With this, weโre hopeful that we get closer to a production-ready 1.0.0 API.
Highlights:
More robust & simpler automated migrations:
lamin migrate create
&lamin migrate deploy
Simpler query syntax (no joins anymore):
ln.File.select(transform__created_by=user)
No need to create a session object to load relationships: access
file.transform
to load aTransform
objectNo need to write out link models in schemas & generally simplified schema syntax
Any schema package (
lnschema_myschema
) is now managed as minimal Django app
Breaking changes:
Renamed
ln.Features
toln.FeatureSet
and is now typically instantiated withFeatureSet.from_iterable()
Removed
ln.Session
Removed
.join()
(replacedSelectStmt
withQuerySet
).all()
now returns aQuerySet
and no longer a list (use.list()
instead)Access
Bionty
objects withinlnschema_bionty
viaRegistry.bionty()
instead ofRegistry.bionty
Removed
File.stream()
as all functionality is now provided throughFile.backed()
Many-to-many fields are now set with
Run.inputs.set()
and appended withRun.inputs.add()
Non-breaking changes:
Vastly simplified dependencies & introduced configurable installation
Auto-generated storage keys are now of the form
lndb/{id}.{suffix}
rather than just{id}.{suffix}
Renamed
ln.add()
toln.save()
Introduced
Registry.select()
,Registry.save()
, andRegistry.delete()
Better tracking & linking of Bionty sources in
lnschema_bionty
Additional notes:
Consolidated docs and auto-generate upon push events to lamindb main
Consolidated submodules (renamed
lndb
tolamindb-setup
, removedlndb-storage
)
The main downsides of migrating to Django are:
Currently only one LaminDB instance loadable per Python session
Type hints & constructor signatures are less pythonic (SQLModel uses less magic than Django) and lead to idiosyncrasies in model definition (nullable defaults) and validation (validation at the Registry-level is more manual as Django foresees validation at the Form level)
SQLAlchemy provides the more powerful Registry, and there might be future use cases that will require them
Complete list of changes below.
Name |
PR |
Developer |
Date |
Version |
---|---|---|---|---|
โป๏ธ Use |
2023-06-13 |
|||
๐ท Dispatch to lamin-examples & redun-lamin-fasta |
2023-06-13 |
|||
๐ฅ Remove |
2023-06-13 |
0.42a9 |
||
๐ธ Prefix auto-storage-key with |
2023-06-12 |
|||
โจ Delete storage in |
2023-06-12 |
|||
โ Add more tests for File init |
2023-06-12 |
|||
๐ Remove test paths from pyproject.toml |
2023-06-11 |
|||
โจ Add |
2023-06-11 |
|||
๐ Rename |
2023-06-10 |
|||
โ ๏ธ Refactor save - it no longer returns records |
2023-06-10 |
|||
๐ Re-organize biology guides |
2023-06-10 |
|||
โจ Populate |
2023-06-09 |
0.42a8 |
||
โก Improved multifield query in |
2023-06-09 |
|||
โฌ๏ธ First stable Django release of |
2023-06-09 |
|||
๐ธ Validate required fields |
2023-06-09 |
|||
๐ Integrate |
2023-06-08 |
0.42a7 |
||
๐ธ Add |
2023-06-08 |
|||
๐ Overhaul README |
2023-06-08 |
|||
โป๏ธ Refactored features code |
2023-06-08 |
|||
๐ Add |
2023-06-08 |
|||
๐งช Add tests for |
2023-06-08 |
|||
๐ Renamed |
2023-06-07 |
|||
๐ |
2023-06-07 |
|||
๐ท Coverage in separate job |
2023-06-07 |
|||
๐จ Import ORMs from .models before reload |
2023-06-07 |
|||
๐ฅ Remove |
2023-06-07 |
|||
๐๏ธ Re-architect transform id |
2023-06-06 |
0.42a6 |
||
๐ Rename |
2023-06-05 |
0.42a5 |
||
โฌ๏ธ Upgrade lnschema-core to 0.35a5 |
2023-06-05 |
|||
๐ Migrate |
2023-06-05 |
0.42a2 |
||
โป๏ธ Polish core schema |
2023-06-05 |
|||
๐ Fix delete for File |
2023-06-04 |
|||
๐ Rework the stream notebook |
2023-06-04 |
|||
๐ Point to lamindb-setup main & fix session |
2023-06-04 |
|||
โ Move nbproject to extra dependencies |
2023-06-04 |
|||
๐ฅ Delete SQLAlchemy related content |
2023-06-04 |
|||
โ Pin boto3 in aws |
2023-06-04 |
|||
๐ฅ Remove SQLAlchemy tests |
2023-06-04 |
|||
โป๏ธ Absorb |
2023-06-03 |
|||
๐ Disentangle keys in storage related test notebooks |
2023-06-03 |
|||
๐ธ ln.track improvements |
2023-06-03 |
|||
๐๏ธ Enable Django backend (part 2) |
2023-06-02 |
|||
๐จ Simplified track sample-level metadata |
2023-06-02 |
|||
๐ Add more loggings to |
2023-06-02 |
0.42a1 |
||
โป๏ธ Refactored feature parsing and |
2023-06-01 |
|||
๐ Move lndb-storage back into lamindb |
2023-06-01 |
|||
๐ Rename |
2023-06-01 |
|||
๐๏ธ Add Django backend (setup) |
2023-05-31 |
|||
โฌ๏ธ Update lndb to 0.45.0 |
2023-05-31 |
0.41.2 |
||
โฌ๏ธ Upgrade lnschema-bionty |
2023-05-30 |
0.41.1 |
||
๐ Fix species config |
2023-05-28 |
0.41.0 |
||
๐จ Clean up CI more |
2023-05-28 |
|||
โ Remove scanpy as test dependency |
2023-05-28 |
|||
๐ท Fix coverage for lndb-storage |
2023-05-28 |
|||
โ Do not install storage extras by default |
2023-05-28 |
0.41a4 |
||
๐ท Bring back nox session |
2023-05-28 |
|||
๐ Refactor guide notebooks |
2023-05-28 |
|||
โจ Add |
2023-05-28 |
|||
๐ท Refactor tests |
2023-05-27 |
|||
โจ Subsettable backed |
2023-05-27 |
|||
๐ Remove setup notebook |
2023-05-27 |
|||
๐๏ธ Remove SQL-level schema modules |
2023-05-26 |
0.41a3 |
||
โฌ๏ธ Upgrade lnschema-bionty to 0.17.1 |
2023-05-25 |
0.40.7 |
||
โฌ๏ธ Downgrade lnschema-bionty to 0.16.5 |
2023-05-25 |
0.40.6 |
||
โป๏ธ Refactor types |
2023-05-23 |
0.40.5 |
||
โป๏ธ Refactor |
2023-05-17 |
|||
๐ธ Pre-join some cheap relationships |
2023-05-16 |
|||
๐ Improve wording |
2023-05-16 |
|||
โจ Added Treatment table |
2023-05-15 |
0.40.3 |
||
๐ Fix ln.Features table name for postgres |
2023-05-11 |
0.40.1 |
||
๐ Update ontology guide |
2023-05-11 |
|||
๐จ Deprecated |
2023-05-11 |
|||
๐จ Replace reference with field for |
2023-05-09 |
0.40.0 |
||
โฌ๏ธ Update bionty to 0.13 |
2023-05-09 |
0.39.8 |
||
๐ Polish |
2023-04-28 |
|||
๐ Polish docs |
2023-04-28 |
|||
โฌ๏ธ Update to lndb 0.44.7 |
2023-04-28 |
0.39.7 |
||
๐ธ Do not require session for |
2023-04-28 |
0.39.6 |
||
โฌ๏ธ Allow load with storage |
2023-04-27 |
0.39.5 |
||
๐ฅ Switch to methods bionty.df(), bionty.lookup() Breaking |
2023-04-27 |
0.39.4 |
||
โฌ๏ธ Upgrade lndb |
2023-04-26 |
0.39.3 |
||
โจ Enable database entries lookup |
2023-04-24 |
0.39.2 |
||
โจ Introduce |
2023-04-24 |
|||
โจ Introduced |
2023-04-24 |
0.39.1 |
||
๐จ Refactor |
2023-04-24 |
0.39.0 |
||
โจ Inherit fsspec kwargs from root and move in root check |
2023-04-23 |
|||
๐ Check anndata version in |
2023-04-23 |
|||
๐ Fix VS Code notebook reinitialization in track |
2023-04-23 |
|||
๐ธ Add |
2023-04-22 |
0.39rc1 |
||
๐ Replace |
2023-04-22 |
|||
๐ Add an export example for |
2023-04-21 |
|||
๐ Fix population of |
2023-04-21 |
0.38.3 |
||
๐ธ Allow registering local postgres instances on the hub |
2023-04-21 |
0.38.2 |
||
๐ธ Improve error message for notebook tracking |
2023-04-19 |
|||
van -> can |
2023-04-19 |
|||
โก Improved feature parsing speed |
2023-04-19 |
0.38.1 |
||
โฌ๏ธ Compatibility with new hub |
2023-04-18 |
0.38.0 |
||
๐ฅ New calling patterns for lnschema-bionty |
2023-04-18 |
|||
โ Use nbproject-test directly |
2023-04-18 |
|||
๐ธ Use relative path in key |
2023-04-18 |
0.37.2 |
||
๐ฉน Unpack |
2023-04-17 |
0.37.1 |
||
๐ Better names, more relationships directly on |
2023-04-16 |
0.37.0 |
||
โจ Add Google Colab integration |
2023-04-16 |
|||
๐ธ Improve notebook tracking UX |
2023-04-14 |
|||
๐จ Simplify |
2023-04-12 |
0.36.3 |
||
๐ Fix initialization of new notebooks |
2023-04-10 |
0.36.1 |
||
๐ธ Filename in |
2023-04-08 |
0.36.0 |
||
โจ Introduce |
2023-04-03 |
0.35.6 |
||
๐ธ More robust ontology version tracking |
2023-04-01 |
|||
๐ Import |
2023-03-28 |
0.35.5 |
||
๐ Move all core entities to root level |
2023-03-27 |
0.35.4 |
||
๐ธ Polish guide |
2023-03-27 |
0.35.3 |
||
๐ Move |
2023-03-27 |
0.35.2 |
||
โป๏ธ Fix |
2023-03-27 |
0.35.1 |
||
๐ Rename |
2023-03-25 |
0.35.0 |
||
๐ Introduce |
2023-03-24 |
|||
๐๏ธ Combine |
2023-03-23 |
|||
๐ Fix optional dependencies |
2023-03-22 |
0.34.2 |
||
๐ฅ Remove |
2023-03-22 |
|||
โฌ๏ธ Updated |
2023-03-21 |
0.34.1 |
||
โฌ๏ธ Upgrade to |
2023-03-20 |
0.34.0 |
||
โป๏ธ Move storage-related code to |
2023-03-20 |
|||
๐ Fix gene id |
2023-03-17 |
|||
๐ Check if env variable exists before trying to get his value |
2023-03-15 |
|||
๐ธ Do not yet show deprecation warning for |
2023-03-15 |
0.33.4 |
||
๐ท Restore streaming test from cloud |
2023-03-15 |
0.33.3 |
||
โฌ๏ธ typeguard<3.0.0 |
2023-03-15 |
|||
โ Remove typeguard dependency |
2023-03-15 |
0.33.2 |
||
โฌ๏ธ Update core |
2023-03-15 |
0.33.1 |
||
๐ Replace |
2023-03-14 |
0.33.0 |
||
๐ธ Smart about |
2023-03-14 |
|||
โจ |
2023-03-14 |
|||
๐๏ธ Introduce |
2023-03-13 |
|||
๐ Improve the docstrings of |
2023-03-10 |
|||
๐ Hide CI related cells in notebooks |
2023-03-10 |
|||
๐ Update docs to clarify sign up and log in |
2023-03-10 |
|||
๐ Prettier species query |
2023-03-09 |
0.32.0 |
||
๐ Refactor docs sidebar |
2023-03-09 |
|||
โฌ๏ธ Upgrade |
2023-03-09 |
|||
๐ฅ Remove |
2023-03-09 |
|||
โ Remove bionty as a dependency |
2023-03-09 |
0.32.0rc1 |
||
๐ Replace |
2023-03-07 |
0.31.1 |
||
๐ Link FAQ and guide to session and notebook API |
2023-03-07 |
|||
โฌ๏ธ Upgrade lndb |
2023-03-07 |
0.31.0 |
||
โฌ๏ธ Upgrade lndb |
2023-03-07 |
|||
๐ Move ingest-folder back to faq |
2023-03-06 |
|||
๐ธ Improve clarity of |
2023-03-06 |
|||
๐ Fix CI |
2023-03-06 |
|||
๐ Rename data objects to data or datasets in titles |
2023-03-06 |
|||
๐ Duplicate README to the guide landing page |
2023-03-06 |
|||
โจ Allow uploading zarr from local paths |
2023-03-05 |
|||
๐ Prettify guide landing page |
2023-03-05 |
|||
๐ Fix upsert for dobject and CI |
2023-03-03 |
0.30.3 |
||
๐ Simplify docs |
2023-03-03 |
|||
๐ธ Do not error, just warn upon installation of lamin |
2023-03-02 |
0.30.2 |
||
๐ Fix iterdir to not list itself |
2023-03-02 |
|||
๐ฅ Remove |
2023-03-01 |
0.30.1 |
||
๐ Fix for listing cloud dir |
2023-03-01 |
0.30.0 |
||
๐จ Add |
2023-03-01 |
|||
๐ Rename |
2023-03-01 |
|||
๐ Ensure filepath is absolute |
2023-03-01 |
|||
๐จ Allow passing a list of relpaths to |
2023-02-28 |
|||
โจ Infer filesystem for anndata read and write |
2023-02-25 |
|||
๐ Replace |
2023-02-25 |
0.29.1 |
||
๐ Add nbproject note box to ingest guide |
2023-02-24 |
|||
๐ฑ |
2023-02-24 |
|||
โฌ๏ธ Upgrade lnschema-core to 0.28.6 |
2023-02-23 |
0.29.0 |
||
๐ฅ Move |
2023-02-23 |
|||
๐ Fix trailing slash within lamindb |
2023-02-22 |
0.28.5 |
||
๐ท Fix CI config |
2023-02-22 |
0.28.4 |
||
๐ Fix version check |
2023-02-22 |
0.28.3 |
||
๐ท Collect docs artifacts |
2023-02-22 |
0.28.2 |
||
๐ Fix trailing slash in storage root |
2023-02-22 |
0.28.1 |
||
๐ Rename |
2023-02-21 |
0.28.0 |
||
๐ Another occurance of local filepath |
2023-02-21 |
|||
๐ท Better CI and better arg validation |
2023-02-21 |
|||
๐ Fix tracking local existing data |
2023-02-21 |
|||
๐ Fix parents for existing data ingestion |
2023-02-21 |
|||
๐จ Disable multiple select results for .add and .delete by fields |
2023-02-20 |
0.28rc1 |
||
โก๏ธ Replace CloudPath with UPath |
2023-02-19 |
|||
๐ท Move fixtures from nox to conftest |
2023-02-17 |
|||
๐ Simplify output for dfolder faq |
2023-02-17 |
|||
๐ Guide to ingest a folder |
2023-02-17 |
|||
๐ Fix determination of sqlite vs postgres |
2023-02-17 |
0.27.2 |
||
๐จ Improve |
2023-02-16 |
0.27.1 |
||
๐ธ Add relationship between |
2023-02-16 |
|||
โจ Confirm dialog for deleting data from storage |
2023-02-16 |
|||
โจ Ingest existing data from configured local storage |
2023-02-16 |
|||
๐ธ Proper client server check for |
2023-02-16 |
|||
โฌ๏ธ Upgrade |
2023-02-16 |
|||
โฌ๏ธ Upgrade and rename |
2023-02-14 |
0.27.0 |
||
๐ Fix tracking of added records during |
2023-02-13 |
|||
โจ Added |
2023-02-13 |
|||
๐จ Added |
2023-02-13 |
|||
๐จ Added zarr tests back and cleaned up faq |
2023-02-13 |
|||
๐ฅ Drop populating runin and tracking usage upon load |
2023-02-13 |
|||
๐ธ Better |
2023-02-09 |
|||
๐ธ Make DObject upload ACID |
2023-02-08 |
|||
๐ Add notebook on Registry lazy loading behavior to FAQ |
2023-02-06 |
|||
๐จ Robust generation of |
2023-02-06 |
0.26.1 |
||
๐จ Added erroring behavior when file doesnโt exist for |
2023-02-06 |
|||
๐ Removed extra fields in dev.datasets.pbmc68k |
2023-02-06 |
|||
โ Removed lnbfx and fix CI |
2023-02-06 |
|||
๐ Query book |
2023-02-06 |
|||
๐ฉน Print dobject name for zarr upload |
2023-02-02 |
|||
๐ Fix load |
2023-02-02 |
|||
๐ฅ Disable Registry relationship preview |
2023-02-02 |
|||
โจ Allow ingesting existing data in the cloud |
2023-02-02 |
|||
๐ Correct filepath in header |
2023-02-01 |
|||
๐ธ Add post-setup settings manager, error on duplicate insert Breaking |
2023-02-01 |
0.26.0 |
||
๐ Fix fallback for notebook name |
2023-01-30 |
0.25.7 |
||
๐ฅ Remove |
2023-01-30 |
|||
โฌ๏ธ Upgrade lndb-setup 0.30.11 |
2023-01-30 |
0.25.6 |
||
โฌ๏ธ Cleaned up dependencies so that itโs not as redundant to lndb-setup |
2023-01-27 |
|||
โ Bring back lnfbx |
2023-01-26 |
0.25.5 |
||
๐ Prettier section headings in the docs |
2023-01-26 |
|||
๐ Pin |
2023-01-26 |
0.25.4 |
||
๐ธ Auto-populate relationship-associated foreign key fields |
2023-01-26 |
0.25.3 |
||
๐ Fix strict type checking for relationships |
2023-01-24 |
0.25.2 |
||
๐ฉบ Increase migrations testing robustness postgres |
2023-01-24 |
|||
๐ Remove linked-select notebook |
2023-01-24 |
|||
โฌ๏ธ Upgrade lnschema-core to 0.25.1 |
2023-01-23 |
0.25.1 |
||
โจ Add explicit remote sqlite instance locking to write operations |
2023-01-23 |
|||
โป๏ธ Refactored FAQ |
2023-01-23 |
|||
๐ Create data validation FAQ |
2023-01-23 |
|||
โ Remove s3fs dependency |
2023-01-23 |
|||
โฌ๏ธ Upgrade lndb-setup to 0.30.8 |
2023-01-23 |
|||
๐ฉน Better treat edge cases upon signup, login, failed instance loading |
2023-01-20 |
0.25.0 |
||
๐ธ Introduce data validation on the Registry level |
2023-01-20 |
|||
โป๏ธ Reorganize quickstart and get-started |
2023-01-20 |
|||
๐ Refactor init guide and show bionty versions in guide |
2023-01-18 |
0.24.6 |
||
โฌ๏ธ Upgrade wetlab schema to 0.13.3 |
2023-01-17 |
0.24.5 |
||
๐ Fix taxon_id type and upgrade bionty |
2023-01-17 |
0.24.4 |
||
โฌ๏ธ Upgrade to lnschema-bionty 0.6.7 |
2023-01-17 |
|||
โฌ๏ธ Upgrade to lndb-setup 0.30.6 |
2023-01-16 |
0.24.3 |
||
โฌ๏ธ Upgrade to lndb_setup==0.30.5 |
2023-01-16 |
0.24.2 |
||
โฌ๏ธ Upgrade lndb-setup to 0.30.4 |
2023-01-16 |
0.24.1 |
||
โฌ๏ธ Upgrade to lndb-setup 0.30.2 |
2023-01-16 |
0.24.0 |
||
๐ธ Better hash exception |
2023-01-12 |
|||
๐ธ Safer session behavior 2/2 Breaking |
2023-01-12 |
0.23.0 |
||
๐ท Extend CI to py3.8-3.10 |
2023-01-12 |
0.22.5 |
||
๐ธ Safer session behavior 1/2 |
2023-01-11 |
|||
โฌ๏ธ Upgrade lndb-setup |
2023-01-10 |
|||
๐ Re-arrange notebooks |
2023-01-09 |
|||
๐ธ Make |
2023-01-09 |
0.22.4 |
||
๐ Improving wording of definitions |
2023-01-08 |
|||
๐ Fixes for lndocs upgrade |
2023-01-08 |
|||
โป๏ธ Refactor guide |
2023-01-08 |
|||
โฌ๏ธ Upgrade |
2023-01-05 |
0.22.3 |
||
โฌ๏ธ Upgrade to |
2023-01-05 |
|||
Fix typos |
2023-01-02 |
|||
๐ Fix bugs in |
2022-12-22 |
0.22.2 |
||
โ Error behavior for ingest |
2022-12-20 |
|||
๐จ Simplify |
2022-12-16 |
|||
โฌ๏ธ Upgrade lndb-setup |
2022-12-16 |
0.22.1 |
||
๐ธ Better CLI & logging |
2022-12-15 |
0.22.0 |
||
โฌ๏ธ Updated setup |
2022-12-15 |
0.21.5 |
||
๐ธ Make |
2022-12-14 |
|||
โฌ๏ธ Upgrade wetlab |
2022-12-13 |
0.21.4 |
||
โฌ๏ธ Upgrade lndb-setup |
2022-12-13 |
0.21.3 |
||
โฌ๏ธ Upgrade lndb-setup |
2022-12-13 |
0.21.2 |
||
โฌ๏ธ Upgrade lndb-setup |
2022-12-12 |
0.21.1 |
||
๐ Fix docs |
2022-12-09 |
|||
๐จ Integrate |
2022-12-09 |
0.21.0 |
||
โฌ๏ธ Upgrade setup, core & wetlab schema |
2022-12-08 |
0.20.0 |
||
๐ฅ Drop all logic related to dynamic settings |
2022-12-08 |
|||
โฌ๏ธ Upgrade wetlab |
2022-12-06 |
0.19.4 |
||
โฌ๏ธ Upgrade wetlab |
2022-12-06 |
0.19.3 |
||
โฌ๏ธ Upgrade wetlab |
2022-12-06 |
0.19.2 |
||
๐ Fix view |
2022-12-05 |
0.19.1 |
||
๐จ Enable inheriting wetlab schemas |
2022-12-05 |
0.19.0 |
||
โ Better tests for features hashing |
2022-12-04 |
|||
โฌ๏ธ Upgrade lndb-setup |
2022-12-04 |
0.18.9 |
||
โจ Check duplication before inserting records |
2022-11-30 |
0.18.8 |
||
๐ธ Do not autoflush upon select |
2022-11-30 |
0.18.7 |
||
๐ Fix bug in schema module name lookup |
2022-11-29 |
|||
โฌ๏ธ Updated wetlab |
2022-11-29 |
0.18.6 |
||
โฌ๏ธ Upgrade |
2022-11-28 |
0.18.5 |
||
โจ Improve lazy selectors |
2022-11-28 |
|||
โฌ๏ธ Update wetlab schema |
2022-11-28 |
0.18.4 |
||
โฌ๏ธ Upgrade wetlab schema |
2022-11-28 |
0.18.3 |
||
โฌ๏ธ Upgrade |
2022-11-28 |
0.18.2 |
||
โฌ๏ธ Upgrade lndb-setup to 0.18.1 |
2022-11-25 |
|||
๐ฅ Removed bioreadout |
2022-11-24 |
0.18.1 |
||
โจ Add lazy selectors to |
2022-11-23 |
|||
๐๏ธ Persist the session |
2022-11-23 |
|||
โฌ๏ธ Upgrade lndb-setup |
2022-11-23 |
|||
โจ Add subset function for dobjects |
2022-11-23 |
0.18.0 |
||
๐จ Drop |
2022-11-22 |
|||
๐จ Simplify schema module handling |
2022-11-22 |
|||
๐ Bring back guide to linking sample-level metadata |
2022-11-21 |
0.17.0 |
||
๐ Add flow example back to main guide |
2022-11-21 |
|||
๐ Update schema |
2022-11-21 |
|||
๐ฉน Restore default |
2022-11-20 |
|||
๐จ Prettify API |
2022-11-18 |
|||
๐ Also return existing features |
2022-11-18 |
|||
๐ Fix select gene doc |
2022-11-18 |
|||
๐๏ธ Refactor ingest |
2022-11-17 |
|||
โจ Knowledge guide |
2022-11-16 |
|||
๐จ Separate |
2022-11-16 |
0.16.0 |
||
๐ Fix data source |
2022-11-15 |
|||
๐ Move storage key to core schema |
2022-11-14 |
0.15.0 |
||
๐ Fixed |
2022-11-14 |
|||
โจ Initialize |
2022-11-12 |
0.14.0 |
||
๐๏ธ Aggregate |
2022-11-12 |
|||
โฌ๏ธ Updated bionty |
2022-11-11 |
|||
๐ Make notebook for |
2022-11-11 |
0.13.0 |
||
โจ Join dataframes |
2022-11-10 |
|||
โจ Fields in join |
2022-11-10 |
|||
โ Add tests for zarr ingest and load |
2022-11-10 |
|||
๐ Rename |
2022-11-10 |
|||
๐ Fix |
2022-11-09 |
0.12.1 |
||
๐ Rename view arg |
2022-11-09 |
0.12.0 |
||
๐ Refactor select notebooks |
2022-11-08 |
|||
๐ Simplify arg in link |
2022-11-08 |
|||
โป๏ธ Refactor select |
2022-11-08 |
|||
โฌ๏ธ Update to |
2022-11-06 |
|||
๐ Rename entries to records in link |
2022-11-04 |
|||
๐ Improve guide |
2022-11-04 |
|||
๐จ Migrate to the new schema modules |
2022-11-04 |
0.11.0 |
||
๐ฅ Removed |
2022-11-03 |
|||
๐จ Removed |
2022-11-03 |
|||
๐ Move |
2022-11-03 |
|||
๐ Remove A prefix from notebooks |
2022-11-03 |
|||
โจ Storage related features |
2022-11-03 |
|||
๐จ Simplify generating records |
2022-11-02 |
|||
๐ Fixed bug in linking features |
2022-11-01 |
|||
๐ฑ Added |
2022-11-01 |
|||
๐ Rename |
2022-11-01 |
|||
๐จ Added LinkFeatureToKnowledgeTable |
2022-10-31 |
|||
โฌ๏ธ Update lndb setup |
2022-10-27 |
0.10.0 |
||
โฌ๏ธ Pinned bionty version |
2022-10-26 |
|||
โฌ๏ธ Updated to lnschema_bionty 0.4.4 |
2022-10-24 |
|||
๐ฅ Remove lndb-hub import |
2022-10-24 |
|||
โจ Enable to get metadata from |
2022-10-24 |
|||
๐ Rename row to record when not yet added to the DB |
2022-10-23 |
|||
โฌ๏ธ Update lndb hub version |
2022-10-23 |
|||
๐จ Replace |
2022-10-22 |
|||
โฌ๏ธ Upgrade |
2022-10-22 |
|||
๐ Update postgres faq notebook |
2022-10-22 |
|||
๐ Moved the rds notebooks to |
2022-10-21 |
|||
โจ Added |
2022-10-21 |
|||
๐ฅ Remove hub import |
2022-10-21 |
|||
๐จ Overhaul |
2022-10-21 |
|||
๐ฉน Skip nc_evolutions table created by nocodb |
2022-10-21 |
|||
โจ Added |
2022-10-20 |
|||
โฌ๏ธ Upgrade wetlab schema |
2022-10-20 |
0.9.6 |
||
โฌ๏ธ Added |
2022-10-19 |
0.9.5 |
||
๐ฉน Fixed rds nbs |
2022-10-18 |
|||
๐ Add prisma examples and implementation ideas |
2022-10-18 |
|||
โป๏ธ Refactor linked select |
2022-10-18 |
0.9.4 |
||
โ๏ธ Fix typo in link table entry fetching |
2022-10-17 |
|||
๐ Fixed link via link tables |
2022-10-15 |
0.9.3 |
||
โจ Add an option to use |
2022-10-15 |
|||
โจ Load returns filepath if no in-memory format is found |
2022-10-13 |
0.9.2 |
||
๐จ Clean up dtransform_in |
2022-10-13 |
0.9.1 |
||
๐จ Continue overhaul |
2022-10-13 |
0.9.0 |
||
๐จ Refactor linking dobjects & base64 encode checksum |
2022-10-13 |
|||
๐ View only prints existing tables |
2022-10-12 |
|||
โจ Added |
2022-10-12 |
0.8.3 |
||
โฌ๏ธ Added bioreadout lookup to guide |
2022-10-12 |
|||
๐ Rename query to select |
2022-10-12 |
|||
๐ฉน Fix out of sync db warning |
2022-10-12 |
|||
โจ Add streaming zarr write and streaming h5ad and zarr read |
2022-10-12 |
|||
๐ Cosmetics |
2022-10-12 |
|||
โป๏ธ Refactor ingest & insert |
2022-10-11 |
|||
โจ Compute checksum during ingest |
2022-10-11 |
|||
๐ Moved bfx ingestion to faq |
2022-10-11 |
|||
โฌ๏ธ Upgrade to |
2022-10-10 |
0.8.2 |
||
๐ Improved ingest guides, fixed linked entry bugs |
2022-10-10 |
|||
๐ Fixed dobject_biometa entry insertion |
2022-10-10 |
0.8.1 |
||
๐ Update test users in docs |
2022-10-10 |
|||
โฌ๏ธ Upgrade |
2022-10-10 |
0.8.0 |
||
๐จ |
2022-10-10 |
|||
โฌ๏ธ Upgrade |
2022-10-10 |
|||
โฌ๏ธ Upgrade |
2022-10-10 |
|||
๐ Improved docs of |
2022-10-10 |
0.7.2 |
||
๐ฅ Refactor |
2022-10-08 |
0.7.1 |
||
๐ Overhauled get-started |
2022-10-07 |
|||
๐ธ Check for existence before deletion |
2022-10-07 |
|||
๐จ Make ingest a static class |
2022-10-07 |
0.7.0 |
||
โฌ๏ธ Upgrade to core schema 0.10.0 |
2022-10-07 |
|||
โจ New ingest API |
2022-10-05 |
0.6.0 |
||
๐ Overhaul documentation |
2022-10-05 |
|||
๐ง Update lndb setup to 0.9.4 |
2022-10-04 |
|||
๐ง Enable setup outside cli |
2022-10-04 |
|||
โฌ๏ธ Upgrade lndb_setup and bionty |
2022-10-03 |
0.5.0 0.5.0 |
||
๐ธ Check for migrations upon import |
2022-10-03 |
|||
๐ Raise warnings for unpopulated columns from insert.from_df |
2022-10-03 |
|||
โฌ๏ธ Upgrade |
2022-10-03 |
|||
โป๏ธ Inherit |
2022-10-01 |
0.4.1 |
||
โฌ๏ธ Upgrade to lnschema_core 0.9.0 |
2022-09-30 |
|||
๐จ Add type annotation to ingest |
2022-09-30 |
|||
โป๏ธ Generalize pipeline ingestion |
2022-09-30 |
|||
โจ Added |
2022-09-29 |
|||
๐จ Get db metadata as a dictionary |
2022-09-29 |
|||
๐จ Added |
2022-09-29 |
|||
โฌ๏ธ Upgrade pkg versions |
2022-09-29 |
|||
๐ธ Test notebook integrity before anything else |
2022-09-26 |
|||
๐ Add a quickstart & update ingest |
2022-09-26 |
|||
๐ Update bfx ingestion demo |
2022-09-26 |
|||
๐ Rename insert.features to insert.featureset_from_features |
2022-09-26 |
|||
๐ Polish documentation |
2022-09-26 |
|||
โจ Populate |
2022-09-26 |
|||
๐ธ Sort select results in DataFrame by source |
2022-09-25 |
|||
โฌ๏ธ Upgrade to core schema 0.7.3 |
2022-09-25 |
|||
๐ฉน Removed logging for inserting link tables |
2022-09-24 |
|||
โจ Ingest bfx outputs with sample metadata |
2022-09-24 |
|||
๐ท Improve notebook test function |
2022-09-23 |
|||
๐งฑ Improved code infra |
2022-09-23 |
0.4.0 |
||
โจ Account for multiple |
2022-09-23 |
|||
โป๏ธ Refactored feature model ingestion |
2022-09-23 |
|||
โป๏ธ Refactored insert |
2022-09-22 |
|||
โฌ๏ธ Upgrade |
2022-09-22 |
|||
โฌ๏ธ Upgrade to core schema 0.7.2 |
2022-09-21 |
|||
๐ |
2022-09-21 |
0.3.11 |
||
๐ Fixed column mapping |
2022-09-19 |
0.3.10 |
||
โจ Allow batch insertion |
2022-09-19 |
|||
โป๏ธ Refactored linked queries |
2022-09-15 |
|||
โฌ๏ธ Update lnbfx to 0.3.5 |
2022-09-14 |
0.3.9 |
||
๐ Refactor pipeline logging |
2022-09-14 |
0.3.8 |
||
โจ Insert unmapped features |
2022-09-14 |
|||
โป๏ธ Refactored linked queries |
2022-09-13 |
|||
โฌ๏ธ Updated wetlab schema |
2022-09-13 |
|||
โป๏ธ Refactor pipeline logging |
2022-09-13 |
0.3.7 |
||
โฌ๏ธ Updated lnbfx version |
2022-09-12 |
0.3.6 |
||
๐ฑ Updated cell ranger test dir |
2022-09-12 |
|||
๐ Fix synchronization error in load |
2022-09-12 |
|||
โฌ๏ธ Updated setup version |
2022-09-08 |
0.3.5 |
||
โป๏ธ Split ingestion logic into IngestObject and IngestPipeline |
2022-09-06 |
|||
๐ Add flow data ingestion example |
2022-09-06 |
|||
๐ Added sidebar to guide |
2022-09-06 |
|||
โป๏ธ Split pipeline ingestion from non-pipeline ingestion |
2022-09-06 |
|||
โฌ๏ธ Updated schema module versions |
2022-09-06 |
|||
โป๏ธ Refactored |
2022-09-05 |
|||
๐ Rename |
2022-09-05 |
|||
๐ Rename |
2022-09-05 |
|||
โป๏ธ Refactored guide |
2022-09-03 |
|||
๐ Prettify documentation |
2022-09-02 |
|||
Update lndb_hub version |
2022-09-01 |
|||
โจ Allow selecting dobjects by biological entities |
2022-09-01 |
0.3.4 |
||
โฌ๏ธ Update to sqm 0.0.8 to silence the warnings |
2022-08-30 |
|||
๐คก R&D team simulation |
2022-08-30 |
|||
๐ธ Fix pipeline ingestion logging |
2022-08-30 |
|||
๐ Move problems page to lamin-profile |
2022-08-30 |
|||
๐ฉน Uncomment out sharing tests |
2022-08-30 |
|||
๐ฅ Removed examples dir |
2022-08-30 |
|||
๐ธ Improve delete function |
2022-08-30 |
|||
๐จ Remove |
2022-08-29 |
|||
๐ Rename |
2022-08-29 |
|||
๐จ Move header call to |
2022-08-29 |
|||
๐ท Get rid of sqm warnings |
2022-08-29 |
|||
๐จ Simplify loading data |
2022-08-29 |
|||
๐ท Allow stripping notebooks, upgrade |
2022-08-29 |
0.3.3 |
||
โจ Use |
2022-08-28 |
|||
โฌ๏ธ Updated to bionty 0.2.2 |
2022-08-28 |
|||
โฌ๏ธ Updated to sqm 0.0.7 |
2022-08-28 |
|||
โฌ๏ธ Updated dependencies |
2022-08-28 |
|||
โฌ๏ธ Upgrade to |
2022-08-26 |
|||
โป๏ธ Update pipeline ingestion to |
2022-08-26 |
|||
๐ฑ Add scrnaseq cellranger dataset |
2022-08-26 |
|||
๐ Fix population of |
2022-08-26 |
|||
โจ Populate |
2022-08-26 |
|||
โฌ๏ธ Updated dependencies |
2022-08-26 |
0.3.2 |
||
โป๏ธ Refactor |
2022-08-26 |
|||
๐ง Temporary solution to extend modules |
2022-08-25 |
0.3.1 |
||
๐๏ธ Make tables within schema modules configurable |
2022-08-25 |
0.3.0 |
||
โ๏ธ Fixed typo in check versions |
2022-08-24 |
|||
๐๏ธ Use id to reference storage |
2022-08-23 |
|||
๐ Renamed |
2022-08-23 |
|||
โฌ๏ธ Upgrade to lnbfx 0.2.0 |
2022-08-23 |
|||
๐ Renamed |
2022-08-23 |
|||
โป๏ธ Cleaned up and added a mouse dataset |
2022-08-23 |
|||
โฌ๏ธ Upgrade lndb-hub to v0.5.0 |
2022-08-23 |
|||
๐ Added logging to update and delete |
2022-08-22 |
|||
โจ Autogenerate |
2022-08-22 |
|||
โฌ๏ธ Upgrade core schema to v0.4.0 |
2022-08-22 |
|||
โจ Track storage root location |
2022-08-22 |
|||
๐ Rename schema modules and bioinformatics module |
2022-08-19 |
|||
โจ Integrate bioinformatics pipline runs |
2022-08-18 |
|||
๐ Updated docs |
2022-08-18 |
|||
๐ฝ Adapt to |
2022-08-18 |
|||
โก Ingest genes properly |
2022-08-16 |
|||
โจ New readout table, registered species |
2022-08-12 |
|||
๐ Migrate |
2022-08-04 |
|||
โฌ๏ธ Upgrade to lndb_setup 0.5.0 |
2022-08-03 |
|||
โฌ๏ธ Upgrade to |
2022-08-03 |
|||
๐ Renamed |
2022-08-03 |
|||
๐ท Cleaner CI environment switching |
2022-08-02 |
0.2.1 |
||
โฌ๏ธ Upgrade to |
2022-08-02 |
0.2.0 |
||
๐ Polish the |
2022-08-02 |
|||
๐ Polish the 4 key tutorial pages |
2022-08-02 |
|||
๐ Polish |
2022-08-01 |
|||
โจ Allow ingesting fcs files and selecting genes |
2022-08-01 |
|||
๐ Prettify user mentions in guide & faq |
2022-08-01 |
|||
โฌ๏ธ Upgrade to |
2022-08-01 |
|||
๐จ Overhauled guide, renamed |
2022-08-01 |
|||
๐ฉน Some fixes of ingesting in-memory dobjects and an analysis draft |
2022-07-31 |
|||
โจ Select and update metadata |
2022-07-31 |
|||
๐ Add a problem statement |
2022-07-31 |
|||
โฌ๏ธ Upgrade to |
2022-07-31 |
|||
๐ง Annotate features during ingestion |
2022-07-31 |
|||
๐ Re-write landing page |
2022-07-30 |
|||
๐ Improve |
2022-07-30 |
|||
โฌ๏ธ Upgrade to |
2022-07-29 |
|||
๐ Move out |
2022-07-29 |
|||
โป๏ธ Refactor sharing on the hub |
2022-07-29 |
|||
โจ Enable sharing dobjects & instances in the hub |
2022-07-29 |
|||
๐ฅ Moved readout vocab to bioreader |
2022-07-28 |
|||
โฌ๏ธ Upgrade |
2022-07-26 |
|||
โฌ๏ธ Upgrade to lndb-cli 0.2.0 |
2022-07-25 |
|||
๐ Account for table construction in lndb-cli |
2022-07-25 |
|||
๐ Move CLI code to |
2022-07-24 |
|||
๐ฑ Adapted to |
2022-07-24 |
|||
๐ธ Let the CLI have actual subcommands |
2022-07-24 |
|||
๐ท Add time out to GitHub Actions |
2022-07-23 |
|||
๐ฅ Switched logger to use lamin-utils |
2022-07-23 |
|||
โจ Annotate biometa when annotating genes |
2022-07-23 |
|||
๐ผ Upgrade to schema 0.2.1 |
2022-07-23 |
|||
๐จ Use modular schema structure |
2022-07-22 |
|||
๐ Move db API from admin to dev |
2022-07-22 |
|||
โจ Enable annotating features of dobjects |
2022-07-22 |
|||
๐ธ Offer manual way of completing a migration |
2022-07-22 |
|||
๐๏ธ Separate settings into user vs. instance and one file per instance |
2022-07-22 |
|||
๐ Fix loading of multi-index and non-id tables |
2022-07-21 |
0.1.2 |
||
๐ Rename table |
2022-07-21 |
|||
๐ Move version check into correct init |
2022-07-20 |
|||
โฌ๏ธ Fix the publishing call by upgrading to nbproject 0.4.3 |
2022-07-19 |
0.1.1 |
||
โจ Add |
2022-07-19 |
0.1.0 |
||
๐ Rename |
2022-07-17 |
|||
๐ Migrate schema out to |
2022-07-17 |
|||
โจ Version dobjects and interfaces |
2022-07-16 |
|||
๐ Pretty logging |
2022-07-15 |
|||
โจ Add |
2022-07-14 |
|||
๐ Add an example of ingesting images |
2022-07-12 |
|||
โฌ๏ธ Upgrade to nbproject 0.2.1 |
2022-07-12 |
|||
๐ Fix bug |
2022-07-12 |
|||
๐ Added example notebook for ingesting fcs files |
2022-07-11 |
|||
โฌ๏ธ Migrate to nbproject 0.2.0 |
2022-07-11 |
|||
๐ธ Auto-check integrity upon data ingestion only on Jupyter Lab |
2022-07-09 |
0.0.9 |
||
๐ Rename |
2022-07-09 |
|||
๐ธ Raise error upon multiple sign ups with same unconfirmed email |
2022-07-09 |
|||
โจ Allow sharing instances with other users |
2022-07-08 |
|||
๐๏ธ Improve configuration logic, flow, logging & testing |
2022-07-08 |
|||
โจ Populate user metadata at sign up |
2022-07-07 |
|||
โจ Unique user identity across instances |
2022-07-06 |
|||
๐ง Enable storing sqlite on S3 |
2022-07-04 |
0.0.8 |
||
๐ Rename table |
2022-07-04 |
|||
๐ Rename CLI from |
2022-07-04 |
|||
โจ Add |
2022-07-03 |
0.0.7 |
||
โป๏ธ Refactor file storage |
2022-07-03 |
0.0.6 |
||
โป๏ธ Refactor settings |
2022-07-02 |
0.0.5 |
||
๐ท Switch to nbproject tests & clean up logging |
2022-07-01 |
|||
โจ Use nbproject publish functionality |
2022-07-01 |
|||
๐ Rename tutorial to guide |
2022-06-29 |
|||
๐ท Measure coverage |
2022-06-26 |
|||
๐๏ธ Settings: From pydantic BaseModel to custom class |
2022-06-25 |
|||
๐๏ธ Complete refactor of setup, settings & storage management |
2022-06-25 |
|||
โฌ๏ธ Upgrade to nbproject 0.1a3 |
2022-06-23 |
|||
๐ One-page layout for data models |
2022-06-14 |
|||
โป๏ธ More explicit |
2022-06-14 |
|||
โป๏ธ Migrate from sql to sqm everywhere |
2022-06-14 |
|||
โจ Implement data access log |
2022-06-12 |
0.0.4 |
||
๐๏ธ Re-organize API |
2022-06-12 |
|||
๐๏ธ Set up db with sqlmodel, test int ids |
2022-06-11 |
|||
๐๏ธ Re-designed entire API |
2022-06-10 |
|||
๐ฅ Remove notion integration up to CLI |
2022-06-10 |
|||
๐ Rename from lamindb to LaminDB & rewrite the landing page |
2022-06-10 |
0.0.3 |
||
๐๏ธ Introduce field |
2022-06-09 |
|||
๐ Rename global |
2022-06-09 |
|||
โจ Track python package dependencies in |
2022-06-09 |
|||
โจ Track title of ingesting notebook in |
2022-06-09 |
|||
๐ Fix user & notebook ingestion, add another test dataset |
2022-06-08 |
|||
โ Fix pandas load, add tests |
||||
โจ Add introspection: |
||||
โจ Add entity |
||||
๐ธ Auto-create local storage dir & cache dir |
||||
โ Add a test for db creation & file ingestion |
||||
๐๏ธ Name the database file like the storage root directory |
||||
โป๏ธ Refactor |
||||
๐ง Refactor |
||||
๐ฅ Remove versioneer |
||||
๐ท Track changes as in |
2022-06-07 |
|||
๐๏ธ Basic file ingestion from a notebook |
2022-06-06 |
|||
๐ฅ Remove |
2022-06-04 |
|||
๐ Change format of license file |
2022-05-23 |
|||
๐ Fix faq link |
2022-05-26 |
|||
โป๏ธ Update to cookiecutter 0.2.0 |
2022-05-23 |
|||
๐ More narrow sidebar |
2022-05-11 |
|||
๐ Switch |
2022-05-11 |
|||
๐ Polish the documentation |
2022-05-11 |
|||
๐ Migrated from |