Changelog#
Name |
PR |
Developer |
Date |
Version |
|---|---|---|---|---|
:memo: Re-organize |
2023-03-30 |
|||
🚸 Check schema version upon instance init |
2023-03-30 |
|||
🐛 Remove use_fsspec from session add |
2023-03-30 |
|||
♻️ Refactor features |
2023-03-29 |
|||
🎨 Move submodules into subdirectory |
2023-03-29 |
|||
🚚 Replace |
2023-03-28 |
0.35.5 |
||
🚚 Move remaining core entities to root level |
2023-03-27 |
0.35.4 |
||
🚸 Polish docs & bump lndb |
2023-03-27 |
0.35.3 |
||
🚚 Move |
2023-03-27 |
0.35.2 |
||
♻️ Fix |
2023-03-27 |
0.35.1 |
||
🚚 Rename |
2023-03-25 |
0.35.0 |
||
🚚 Introduce |
2023-03-24 |
|||
🏗️ Combine |
2023-03-23 |
|||
🚑 Fix optional dependencies |
2023-03-22 |
0.34.2 |
||
🔥 Remove |
2023-03-22 |
|||
⬆️ Updated |
2023-03-21 |
0.34.1 |
||
⬆️ Upgrade to |
2023-03-20 |
0.34.0 |
||
♻️ Move storage-related code to |
2023-03-20 |
|||
🚑 Fix gene id |
2023-03-17 |
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🐛 Check if env variable exists before trying to get his value |
2023-03-15 |
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🚸 Do not yet show deprecation warning for |
2023-03-15 |
0.33.4 |
||
👷 Restore streaming test from cloud |
2023-03-15 |
0.33.3 |
||
⬇️ typeguard<3.0.0 |
2023-03-15 |
|||
➖ Remove typeguard dependency |
2023-03-15 |
0.33.2 |
||
⬆️ Update core |
2023-03-15 |
0.33.1 |
||
🚚 Replace |
2023-03-14 |
0.33.0 |
||
🚸 Smart about |
2023-03-14 |
|||
✨ |
2023-03-14 |
|||
🏗️ Introduce |
2023-03-13 |
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📝 Improve the docstrings of |
2023-03-10 |
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📝 Hide CI related cells in notebooks |
2023-03-10 |
|||
📝 Update docs to clarify sign up and log in |
2023-03-10 |
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📝 Prettier species query |
2023-03-09 |
0.32.0 |
||
📝 Refactor docs sidebar |
2023-03-09 |
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⬆️ Upgrade |
2023-03-09 |
|||
🔥 Remove |
2023-03-09 |
|||
➖ Remove bionty as a dependency |
2023-03-09 |
0.32.0rc1 |
||
📝 Replace |
2023-03-07 |
0.31.1 |
||
📝 Link FAQ and guide to session and notebook API |
2023-03-07 |
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⬆️ Upgrade lndb |
2023-03-07 |
0.31.0 |
||
⬆️ Upgrade lndb |
2023-03-07 |
|||
📝 Move ingest-folder back to faq |
2023-03-06 |
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🚸 Improve clarity of |
2023-03-06 |
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💚 Fix CI |
2023-03-06 |
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🚚 Rename data objects to data or datasets in titles |
2023-03-06 |
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📝 Duplicate README to the guide landing page |
2023-03-06 |
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✨ Allow uploading zarr from local paths |
2023-03-05 |
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📝 Prettify guide landing page |
2023-03-05 |
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🚑 Fix upsert for dobject and CI |
2023-03-03 |
0.30.3 |
||
💄 Simplify docs |
2023-03-03 |
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🚸 Do not error, just warn upon installation of lamin |
2023-03-02 |
0.30.2 |
||
🚑 Fix iterdir to not list itself |
2023-03-02 |
|||
🔥 Remove |
2023-03-01 |
0.30.1 |
||
🚑 Fix for listing cloud dir |
2023-03-01 |
0.30.0 |
||
🎨 Add |
2023-03-01 |
|||
🚚 Rename |
2023-03-01 |
|||
🚑 Ensure filepath is absolute |
2023-03-01 |
|||
🎨 Allow passing a list of relpaths to |
2023-02-28 |
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✨ Infer filesystem for anndata read and write |
2023-02-25 |
|||
📝 Replace |
2023-02-25 |
0.29.1 |
||
📝 Add nbproject note box to ingest guide |
2023-02-24 |
|||
🍱 |
2023-02-24 |
|||
⬆️ Upgrade lnschema-core to 0.28.6 |
2023-02-23 |
0.29.0 |
||
💥 Move |
2023-02-23 |
|||
🐛 Fix trailing slash within lamindb |
2023-02-22 |
0.28.5 |
||
👷 Fix CI config |
2023-02-22 |
0.28.4 |
||
🐛 Fix version check |
2023-02-22 |
0.28.3 |
||
👷 Collect docs artifacts |
2023-02-22 |
0.28.2 |
||
🐛 Fix trailing slash in storage root |
2023-02-22 |
0.28.1 |
||
🚚 Rename |
2023-02-21 |
0.28.0 |
||
🐛 Another occurance of local filepath |
2023-02-21 |
|||
👷 Better CI and better arg validation |
2023-02-21 |
|||
🐛 Fix tracking local existing data |
2023-02-21 |
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🚑 Fix parents for existing data ingestion |
2023-02-21 |
|||
🎨 Disable multiple select results for .add and .delete by fields |
2023-02-20 |
0.28rc1 |
||
⚡️ Replace CloudPath with UPath |
2023-02-19 |
|||
👷 Move fixtures from nox to conftest |
2023-02-17 |
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📝 Simplify output for dfolder faq |
2023-02-17 |
|||
📝 Guide to ingest a folder |
2023-02-17 |
|||
🚑 Fix determination of sqlite vs postgres |
2023-02-17 |
0.27.2 |
||
🎨 Improve |
2023-02-16 |
0.27.1 |
||
🚸 Add relationship between |
2023-02-16 |
|||
✨ Confirm dialog for deleting data from storage |
2023-02-16 |
|||
✨ Ingest existing data from configured local storage |
2023-02-16 |
|||
🚸 Proper client server check for |
2023-02-16 |
|||
⬆️ Upgrade |
2023-02-16 |
|||
⬆️ Upgrade and rename |
2023-02-14 |
0.27.0 |
||
🚑 Fix tracking of added records during |
2023-02-13 |
|||
✨ Added |
2023-02-13 |
|||
🎨 Added |
2023-02-13 |
|||
🎨 Added zarr tests back and cleaned up faq |
2023-02-13 |
|||
🔥 Drop populating runin and tracking usage upon load |
2023-02-13 |
|||
🚸 Better |
2023-02-09 |
|||
🚸 Make DObject upload ACID |
2023-02-08 |
|||
📝 Add notebook on ORM lazy loading behavior to FAQ |
2023-02-06 |
|||
🎨 Robust generation of |
2023-02-06 |
0.26.1 |
||
🎨 Added erroring behavior when file doesn’t exist for |
2023-02-06 |
|||
📝 Removed extra fields in dev.datasets.pbmc68k |
2023-02-06 |
|||
➖ Removed lnbfx and fix CI |
2023-02-06 |
|||
📝 Query book |
2023-02-06 |
|||
🩹 Print dobject name for zarr upload |
2023-02-02 |
|||
:bug: Fix load |
2023-02-02 |
|||
🔥 Disable ORM relationship preview |
2023-02-02 |
|||
✨ Allow ingesting existing data in the cloud |
2023-02-02 |
|||
🐛 Correct filepath in header |
2023-02-01 |
|||
🚸 Add post-setup settings manager, error on duplicate insert Breaking |
2023-02-01 |
0.26.0 |
||
🐛 Fix fallback for notebook name |
2023-01-30 |
0.25.7 |
||
🔥 Remove |
2023-01-30 |
|||
⬆️ Upgrade lndb-setup 0.30.11 |
2023-01-30 |
0.25.6 |
||
⬆️ Cleaned up dependencies so that it’s not as redundant to lndb-setup |
2023-01-27 |
|||
➕ Bring back lnfbx |
2023-01-26 |
0.25.5 |
||
📝 Prettier section headings in the docs |
2023-01-26 |
|||
📌 Pin |
2023-01-26 |
0.25.4 |
||
🚸 Auto-populate relationship-associated foreign key fields |
2023-01-26 |
0.25.3 |
||
🐛 Fix strict type checking for relationships |
2023-01-24 |
0.25.2 |
||
🩺 Increase migrations testing robustness postgres |
2023-01-24 |
|||
📝 Remove linked-select notebook |
2023-01-24 |
|||
⬆️ Upgrade lnschema-core to 0.25.1 |
2023-01-23 |
0.25.1 |
||
✨ Add explicit remote sqlite instance locking to write operations |
2023-01-23 |
|||
♻️ Refactored FAQ |
2023-01-23 |
|||
📝 Create data validation FAQ |
2023-01-23 |
|||
➖ Remove s3fs dependency |
2023-01-23 |
|||
⬆️ Upgrade lndb-setup to 0.30.8 |
2023-01-23 |
|||
🩹 Better treat edge cases upon signup, login, failed instance loading |
2023-01-20 |
0.25.0 |
||
🚸 Introduce data validation on the ORM level |
2023-01-20 |
|||
♻️ Reorganize quickstart and get-started |
2023-01-20 |
|||
📝 Refactor init guide and show bionty versions in guide |
2023-01-18 |
0.24.6 |
||
⬆️ Upgrade wetlab schema to 0.13.3 |
2023-01-17 |
0.24.5 |
||
🐛 Fix taxon_id type and upgrade bionty |
2023-01-17 |
0.24.4 |
||
⬆️ Upgrade to lnschema-bionty 0.6.7 |
2023-01-17 |
|||
⬆️ Upgrade to lndb-setup 0.30.6 |
2023-01-16 |
0.24.3 |
||
⬆️ Upgrade to lndb_setup==0.30.5 |
2023-01-16 |
0.24.2 |
||
⬆️ Upgrade lndb-setup to 0.30.4 |
2023-01-16 |
0.24.1 |
||
⬆️ Upgrade to lndb-setup 0.30.2 |
2023-01-16 |
0.24.0 |
||
🚸 Better hash exception |
2023-01-12 |
|||
🚸 Safer session behavior 2/2 Breaking |
2023-01-12 |
0.23.0 |
||
👷 Extend CI to py3.8-3.10 |
2023-01-12 |
0.22.5 |
||
🚸 Safer session behavior 1/2 |
2023-01-11 |
|||
⬆️ Upgrade lndb-setup |
2023-01-10 |
|||
📝 Re-arrange notebooks |
2023-01-09 |
|||
🚸 Make |
2023-01-09 |
0.22.4 |
||
📝 Improving wording of definitions |
2023-01-08 |
|||
📝 Fixes for lndocs upgrade |
2023-01-08 |
|||
♻️ Refactor guide |
2023-01-08 |
|||
⬆️ Upgrade |
2023-01-05 |
0.22.3 |
||
⬆️ Upgrade to |
2023-01-05 |
|||
Fix typos |
2023-01-02 |
|||
🐛 Fix bugs in |
2022-12-22 |
0.22.2 |
||
✅ Error behavior for ingest |
2022-12-20 |
|||
🎨 Simplify |
2022-12-16 |
|||
⬆️ Upgrade lndb-setup |
2022-12-16 |
0.22.1 |
||
🚸 Better CLI & logging |
2022-12-15 |
0.22.0 |
||
⬆️ Updated setup |
2022-12-15 |
0.21.5 |
||
🚸 Make |
2022-12-14 |
|||
⬆️ Upgrade wetlab |
2022-12-13 |
0.21.4 |
||
⬆️ Upgrade lndb-setup |
2022-12-13 |
0.21.3 |
||
⬆️ Upgrade lndb-setup |
2022-12-13 |
0.21.2 |
||
⬆️ Upgrade lndb-setup |
2022-12-12 |
0.21.1 |
||
📝 Fix docs |
2022-12-09 |
|||
🎨 Integrate |
2022-12-09 |
0.21.0 |
||
⬆️ Upgrade setup, core & wetlab schema |
2022-12-08 |
0.20.0 |
||
🔥 Drop all logic related to dynamic settings |
2022-12-08 |
|||
⬆️ Upgrade wetlab |
2022-12-06 |
0.19.4 |
||
⬆️ Upgrade wetlab |
2022-12-06 |
0.19.3 |
||
⬆️ Upgrade wetlab |
2022-12-06 |
0.19.2 |
||
🐛 Fix view |
2022-12-05 |
0.19.1 |
||
🎨 Enable inheriting wetlab schemas |
2022-12-05 |
0.19.0 |
||
✅ Better tests for features hashing |
2022-12-04 |
|||
⬆️ Upgrade lndb-setup |
2022-12-04 |
0.18.9 |
||
✨ Check duplication before inserting records |
2022-11-30 |
0.18.8 |
||
🚸 Do not autoflush upon select |
2022-11-30 |
0.18.7 |
||
🐛 Fix bug in schema module name lookup |
2022-11-29 |
|||
⬆️ Updated wetlab |
2022-11-29 |
0.18.6 |
||
⬆️ Upgrade |
2022-11-28 |
0.18.5 |
||
✨ Improve lazy selectors |
2022-11-28 |
|||
⬆️ Update wetlab schema |
2022-11-28 |
0.18.4 |
||
⬆️ Upgrade wetlab schema |
2022-11-28 |
0.18.3 |
||
⬆️ Upgrade |
2022-11-28 |
0.18.2 |
||
⬆️ Upgrade lndb-setup to 0.18.1 |
2022-11-25 |
|||
🔥 Removed bioreadout |
2022-11-24 |
0.18.1 |
||
✨ Add lazy selectors to |
2022-11-23 |
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🏗️ Persist the session |
2022-11-23 |
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⬆️ Upgrade lndb-setup |
2022-11-23 |
|||
✨ Add subset function for dobjects |
2022-11-23 |
0.18.0 |
||
🎨 Drop |
2022-11-22 |
|||
🎨 Simplify schema module handling |
2022-11-22 |
|||
📝 Bring back guide to linking sample-level metadata |
2022-11-21 |
0.17.0 |
||
📝 Add flow example back to main guide |
2022-11-21 |
|||
📝 Update schema |
2022-11-21 |
|||
🩹 Restore default |
2022-11-20 |
|||
🎨 Prettify API |
2022-11-18 |
|||
🐛 Also return existing features |
2022-11-18 |
|||
📝 Fix select gene doc |
2022-11-18 |
|||
🏗️ Refactor ingest |
2022-11-17 |
|||
✨ Knowledge guide |
2022-11-16 |
|||
🎨 Separate |
2022-11-16 |
0.16.0 |
||
🐛 Fix data source |
2022-11-15 |
|||
🚚 Move storage key to core schema |
2022-11-14 |
0.15.0 |
||
🐛 Fixed |
2022-11-14 |
|||
✨ Initialize |
2022-11-12 |
0.14.0 |
||
🏗️ Aggregate |
2022-11-12 |
|||
⬆️ Updated bionty |
2022-11-11 |
|||
📝 Make notebook for |
2022-11-11 |
0.13.0 |
||
✨ Join dataframes |
2022-11-10 |
|||
✨ Fields in join |
2022-11-10 |
|||
✅ Add tests for zarr ingest and load |
2022-11-10 |
|||
🚚 Rename |
2022-11-10 |
|||
🐛 Fix |
2022-11-09 |
0.12.1 |
||
🚚 Rename view arg |
2022-11-09 |
0.12.0 |
||
📝 Refactor select notebooks |
2022-11-08 |
|||
📝 Simplify arg in link |
2022-11-08 |
|||
♻️ Refactor select |
2022-11-08 |
|||
⬆️ Update to |
2022-11-06 |
|||
🚚 Rename entries to records in link |
2022-11-04 |
|||
📝 Improve guide |
2022-11-04 |
|||
🎨 Migrate to the new schema modules |
2022-11-04 |
0.11.0 |
||
🔥 Removed |
2022-11-03 |
|||
🎨 Removed |
2022-11-03 |
|||
🚚 Move |
2022-11-03 |
|||
🚚 Remove A prefix from notebooks |
2022-11-03 |
|||
✨ Storage related features |
2022-11-03 |
|||
🎨 Simplify generating records |
2022-11-02 |
|||
🐛 Fixed bug in linking features |
2022-11-01 |
|||
🍱 Added |
2022-11-01 |
|||
🚚 Rename |
2022-11-01 |
|||
🎨 Added LinkFeatureToKnowledgeTable |
2022-10-31 |
|||
⬆️ Update lndb setup |
2022-10-27 |
0.10.0 |
||
⬆️ Pinned bionty version |
2022-10-26 |
|||
⬆️ Updated to lnschema_bionty 0.4.4 |
2022-10-24 |
|||
🔥 Remove lndb-hub import |
2022-10-24 |
|||
✨ Enable to get metadata from |
2022-10-24 |
|||
📝 Rename row to record when not yet added to the DB |
2022-10-23 |
|||
⬆️ Update lndb hub version |
2022-10-23 |
|||
🎨 Replace |
2022-10-22 |
|||
⬆️ Upgrade |
2022-10-22 |
|||
📝 Update postgres faq notebook |
2022-10-22 |
|||
🚚 Moved the rds notebooks to |
2022-10-21 |
|||
✨ Added |
2022-10-21 |
|||
🔥 Remove hub import |
2022-10-21 |
|||
🎨 Overhaul |
2022-10-21 |
|||
🩹 Skip nc_evolutions table created by nocodb |
2022-10-21 |
|||
✨ Added |
2022-10-20 |
|||
⬆️ Upgrade wetlab schema |
2022-10-20 |
0.9.6 |
||
⬆️ Added |
2022-10-19 |
0.9.5 |
||
🩹 Fixed rds nbs |
2022-10-18 |
|||
📝 Add prisma examples and implementation ideas |
2022-10-18 |
|||
♻️ Refactor linked select |
2022-10-18 |
0.9.4 |
||
✏️ Fix typo in link table entry fetching |
2022-10-17 |
|||
🐛 Fixed link via link tables |
2022-10-15 |
0.9.3 |
||
✨ Add an option to use |
2022-10-15 |
|||
✨ Load returns filepath if no in-memory format is found |
2022-10-13 |
0.9.2 |
||
🎨 Clean up dtransform_in |
2022-10-13 |
0.9.1 |
||
🎨 Continue overhaul |
2022-10-13 |
0.9.0 |
||
🎨 Refactor linking dobjects & base64 encode checksum |
2022-10-13 |
|||
🐛 View only prints existing tables |
2022-10-12 |
|||
✨ Added |
2022-10-12 |
0.8.3 |
||
⬆️ Added bioreadout lookup to guide |
2022-10-12 |
|||
🚚 Rename query to select |
2022-10-12 |
|||
🩹 Fix out of sync db warning |
2022-10-12 |
|||
✨ Add streaming zarr write and streaming h5ad and zarr read |
2022-10-12 |
|||
💄 Cosmetics |
2022-10-12 |
|||
♻️ Refactor ingest & insert |
2022-10-11 |
|||
✨ Compute checksum during ingest |
2022-10-11 |
|||
🚚 Moved bfx ingestion to faq |
2022-10-11 |
|||
⬆️ Upgrade to |
2022-10-10 |
0.8.2 |
||
📝 Improved ingest guides, fixed linked entry bugs |
2022-10-10 |
|||
🐛 Fixed dobject_biometa entry insertion |
2022-10-10 |
0.8.1 |
||
📝 Update test users in docs |
2022-10-10 |
|||
⬆️ Upgrade |
2022-10-10 |
0.8.0 |
||
🎨 |
2022-10-10 |
|||
⬆️ Upgrade |
2022-10-10 |
|||
⬆️ Upgrade |
2022-10-10 |
|||
📝 Improved docs of |
2022-10-10 |
0.7.2 |
||
💥 Refactor |
2022-10-08 |
0.7.1 |
||
📝 Overhauled get-started |
2022-10-07 |
|||
🚸 Check for existence before deletion |
2022-10-07 |
|||
🎨 Make ingest a static class |
2022-10-07 |
0.7.0 |
||
⬆️ Upgrade to core schema 0.10.0 |
2022-10-07 |
|||
✨ New ingest API |
2022-10-05 |
0.6.0 |
||
📝 Overhaul documentation |
2022-10-05 |
|||
🔧 Update lndb setup to 0.9.4 |
2022-10-04 |
|||
🔧 Enable setup outside cli |
2022-10-04 |
|||
⬆️ Upgrade lndb_setup and bionty |
2022-10-03 |
0.5.0 0.5.0 |
||
🚸 Check for migrations upon import |
2022-10-03 |
|||
🔊 Raise warnings for unpopulated columns from insert.from_df |
2022-10-03 |
|||
⬆️ Upgrade |
2022-10-03 |
|||
♻️ Inherit |
2022-10-01 |
0.4.1 |
||
⬆️ Upgrade to lnschema_core 0.9.0 |
2022-09-30 |
|||
🎨 Add type annotation to ingest |
2022-09-30 |
|||
♻️ Generalize pipeline ingestion |
2022-09-30 |
|||
✨ Added |
2022-09-29 |
|||
🎨 Get db metadata as a dictionary |
2022-09-29 |
|||
🎨 Added |
2022-09-29 |
|||
⬆️ Upgrade pkg versions |
2022-09-29 |
|||
🚸 Test notebook integrity before anything else |
2022-09-26 |
|||
📝 Add a quickstart & update ingest |
2022-09-26 |
|||
📝 Update bfx ingestion demo |
2022-09-26 |
|||
🚚 Rename insert.features to insert.featureset_from_features |
2022-09-26 |
|||
📝 Polish documentation |
2022-09-26 |
|||
✨ Populate |
2022-09-26 |
|||
🚸 Sort select results in DataFrame by source |
2022-09-25 |
|||
⬆️ Upgrade to core schema 0.7.3 |
2022-09-25 |
|||
🩹 Removed logging for inserting link tables |
2022-09-24 |
|||
✨ Ingest bfx outputs with sample metadata |
2022-09-24 |
|||
👷 Improve notebook test function |
2022-09-23 |
|||
🧱 Improved code infra |
2022-09-23 |
0.4.0 |
||
✨ Account for multiple |
2022-09-23 |
|||
♻️ Refactored feature model ingestion |
2022-09-23 |
|||
♻️ Refactored insert |
2022-09-22 |
|||
⬆️ Upgrade |
2022-09-22 |
|||
⬆️ Upgrade to core schema 0.7.2 |
2022-09-21 |
|||
🚑 |
2022-09-21 |
0.3.11 |
||
🐛 Fixed column mapping |
2022-09-19 |
0.3.10 |
||
✨ Allow batch insertion |
2022-09-19 |
|||
♻️ Refactored linked queries |
2022-09-15 |
|||
⬆️ Update lnbfx to 0.3.5 |
2022-09-14 |
0.3.9 |
||
🔊 Refactor pipeline logging |
2022-09-14 |
0.3.8 |
||
✨ Insert unmapped features |
2022-09-14 |
|||
♻️ Refactored linked queries |
2022-09-13 |
|||
⬆️ Updated wetlab schema |
2022-09-13 |
|||
♻️ Refactor pipeline logging |
2022-09-13 |
0.3.7 |
||
⬆️ Updated lnbfx version |
2022-09-12 |
0.3.6 |
||
🍱 Updated cell ranger test dir |
2022-09-12 |
|||
🐛 Fix synchronization error in load |
2022-09-12 |
|||
⬆️ Updated setup version |
2022-09-08 |
0.3.5 |
||
♻️ Split ingestion logic into IngestObject and IngestPipeline |
2022-09-06 |
|||
📝 Add flow data ingestion example |
2022-09-06 |
|||
💄 Added sidebar to guide |
2022-09-06 |
|||
♻️ Split pipeline ingestion from non-pipeline ingestion |
2022-09-06 |
|||
⬆️ Updated schema module versions |
2022-09-06 |
|||
♻️ Refactored |
2022-09-05 |
|||
🚚 Rename |
2022-09-05 |
|||
🚚 Rename |
2022-09-05 |
|||
♻️ Refactored guide |
2022-09-03 |
|||
📝 Prettify documentation |
2022-09-02 |
|||
Update lndb_hub version |
2022-09-01 |
|||
✨ Allow selecting dobjects by biological entities |
2022-09-01 |
0.3.4 |
||
⬆️ Update to sqm 0.0.8 to silence the warnings |
2022-08-30 |
|||
🤡 R&D team simulation |
2022-08-30 |
|||
🚸 Fix pipeline ingestion logging |
2022-08-30 |
|||
🚚 Move problems page to lamin-profile |
2022-08-30 |
|||
🩹 Uncomment out sharing tests |
2022-08-30 |
|||
🔥 Removed examples dir |
2022-08-30 |
|||
🚸 Improve delete function |
2022-08-30 |
|||
🎨 Remove |
2022-08-29 |
|||
🚚 Rename |
2022-08-29 |
|||
🎨 Move header call to |
2022-08-29 |
|||
👷 Get rid of sqm warnings |
2022-08-29 |
|||
🎨 Simplify loading data |
2022-08-29 |
|||
👷 Allow stripping notebooks, upgrade |
2022-08-29 |
0.3.3 |
||
✨ Use |
2022-08-28 |
|||
⬆️ Updated to bionty 0.2.2 |
2022-08-28 |
|||
⬆️ Updated to sqm 0.0.7 |
2022-08-28 |
|||
⬆️ Updated dependencies |
2022-08-28 |
|||
⬆️ Upgrade to |
2022-08-26 |
|||
♻️ Update pipeline ingestion to |
2022-08-26 |
|||
🍱 Add scrnaseq cellranger dataset |
2022-08-26 |
|||
🐛 Fix population of |
2022-08-26 |
|||
✨ Populate |
2022-08-26 |
|||
⬆️ Updated dependencies |
2022-08-26 |
0.3.2 |
||
♻️ Refactor |
2022-08-26 |
|||
🚧 Temporary solution to extend modules |
2022-08-25 |
0.3.1 |
||
🏗️ Make tables within schema modules configurable |
2022-08-25 |
0.3.0 |
||
✏️ Fixed typo in check versions |
2022-08-24 |
|||
🏗️ Use id to reference storage |
2022-08-23 |
|||
🚚 Renamed |
2022-08-23 |
|||
⬆️ Upgrade to lnbfx 0.2.0 |
2022-08-23 |
|||
🚚 Renamed |
2022-08-23 |
|||
♻️ Cleaned up and added a mouse dataset |
2022-08-23 |
|||
⬆️ Upgrade lndb-hub to v0.5.0 |
2022-08-23 |
|||
💄 Added logging to update and delete |
2022-08-22 |
|||
✨ Autogenerate |
2022-08-22 |
|||
⬆️ Upgrade core schema to v0.4.0 |
2022-08-22 |
|||
✨ Track storage root location |
2022-08-22 |
|||
🚚 Rename schema modules and bioinformatics module |
2022-08-19 |
|||
✨ Integrate bioinformatics pipline runs |
2022-08-18 |
|||
📝 Updated docs |
2022-08-18 |
|||
👽 Adapt to |
2022-08-18 |
|||
⚡ Ingest genes properly |
2022-08-16 |
|||
✨ New readout table, registered species |
2022-08-12 |
|||
🚚 Migrate |
2022-08-04 |
|||
⬆️ Upgrade to lndb_setup 0.5.0 |
2022-08-03 |
|||
⬆️ Upgrade to |
2022-08-03 |
|||
🚚 Renamed |
2022-08-03 |
|||
👷 Cleaner CI environment switching |
2022-08-02 |
0.2.1 |
||
⬆️ Upgrade to |
2022-08-02 |
0.2.0 |
||
📝 Polish the |
2022-08-02 |
|||
📝 Polish the 4 key tutorial pages |
2022-08-02 |
|||
📝 Polish |
2022-08-01 |
|||
✨ Allow ingesting fcs files and selecting genes |
2022-08-01 |
|||
📝 Prettify user mentions in guide & faq |
2022-08-01 |
|||
⬆️ Upgrade to |
2022-08-01 |
|||
🎨 Overhauled guide, renamed |
2022-08-01 |
|||
🩹 Some fixes of ingesting in-memory dobjects and an analysis draft |
2022-07-31 |
|||
✨ Select and update metadata |
2022-07-31 |
|||
📝 Add a problem statement |
2022-07-31 |
|||
⬆️ Upgrade to |
2022-07-31 |
|||
🚧 Annotate features during ingestion |
2022-07-31 |
|||
📝 Re-write landing page |
2022-07-30 |
|||
📝 Improve |
2022-07-30 |
|||
⬆️ Upgrade to |
2022-07-29 |
|||
🚚 Move out |
2022-07-29 |
|||
♻️ Refactor sharing on the hub |
2022-07-29 |
|||
✨ Enable sharing dobjects & instances in the hub |
2022-07-29 |
|||
🔥 Moved readout vocab to bioreader |
2022-07-28 |
|||
⬆️ Upgrade |
2022-07-26 |
|||
⬆️ Upgrade to lndb-cli 0.2.0 |
2022-07-25 |
|||
🚚 Account for table construction in lndb-cli |
2022-07-25 |
|||
🚚 Move CLI code to |
2022-07-24 |
|||
🍱 Adapted to |
2022-07-24 |
|||
🚸 Let the CLI have actual subcommands |
2022-07-24 |
|||
👷 Add time out to GitHub Actions |
2022-07-23 |
|||
🔥 Switched logger to use lamin-logger |
2022-07-23 |
|||
✨ Annotate biometa when annotating genes |
2022-07-23 |
|||
🔼 Upgrade to schema 0.2.1 |
2022-07-23 |
|||
🎨 Use modular schema structure |
2022-07-22 |
|||
🚚 Move db API from admin to dev |
2022-07-22 |
|||
✨ Enable annotating features of dobjects |
2022-07-22 |
|||
🚸 Offer manual way of completing a migration |
2022-07-22 |
|||
🏗️ Separate settings into user vs. instance and one file per instance |
2022-07-22 |
|||
🐛 Fix loading of multi-index and non-id tables |
2022-07-21 |
0.1.2 |
||
🚚 Rename table |
2022-07-21 |
|||
🚚 Move version check into correct init |
2022-07-20 |
|||
⬆️ Fix the publishing call by upgrading to nbproject 0.4.3 |
2022-07-19 |
0.1.1 |
||
✨ Add |
2022-07-19 |
0.1.0 |
||
🚚 Rename |
2022-07-17 |
|||
🚚 Migrate schema out to |
2022-07-17 |
|||
✨ Version dobjects and interfaces |
2022-07-16 |
|||
💄 Pretty logging |
2022-07-15 |
|||
✨ Add |
2022-07-14 |
|||
📝 Add an example of ingesting images |
2022-07-12 |
|||
⬆️ Upgrade to nbproject 0.2.1 |
2022-07-12 |
|||
🐛 Fix bug |
2022-07-12 |
|||
📝 Added example notebook for ingesting fcs files |
2022-07-11 |
|||
⬆️ Migrate to nbproject 0.2.0 |
2022-07-11 |
|||
🚸 Auto-check integrity upon data ingestion only on Jupyter Lab |
2022-07-09 |
0.0.9 |
||
🚚 Rename |
2022-07-09 |
|||
🚸 Raise error upon multiple sign ups with same unconfirmed email |
2022-07-09 |
|||
✨ Allow sharing instances with other users |
2022-07-08 |
|||
🏗️ Improve configuration logic, flow, logging & testing |
2022-07-08 |
|||
✨ Populate user metadata at sign up |
2022-07-07 |
|||
✨ Unique user identity across instances |
2022-07-06 |
|||
🚧 Enable storing sqlite on S3 |
2022-07-04 |
0.0.8 |
||
🚚 Rename table |
2022-07-04 |
|||
🚚 Rename CLI from |
2022-07-04 |
|||
✨ Add |
2022-07-03 |
0.0.7 |
||
♻️ Refactor file storage |
2022-07-03 |
0.0.6 |
||
♻️ Refactor settings |
2022-07-02 |
0.0.5 |
||
👷 Switch to nbproject tests & clean up logging |
2022-07-01 |
|||
✨ Use nbproject publish functionality |
2022-07-01 |
|||
🚚 Rename tutorial to guide |
2022-06-29 |
|||
👷 Measure coverage |
2022-06-26 |
|||
🏗️ Settings: From pydantic BaseModel to custom class |
2022-06-25 |
|||
🏗️ Complete refactor of setup, settings & storage management |
2022-06-25 |
|||
⬆️ Upgrade to nbproject 0.1a3 |
2022-06-23 |
|||
📝 One-page layout for data models |
2022-06-14 |
|||
♻️ More explicit |
2022-06-14 |
|||
♻️ Migrate from sql to sqm everywhere |
2022-06-14 |
|||
✨ Implement data access log |
2022-06-12 |
0.0.4 |
||
🏗️ Re-organize API |
2022-06-12 |
|||
🏗️ Set up db with sqlmodel, test int ids |
2022-06-11 |
|||
🏗️ Re-designed entire API |
2022-06-10 |
|||
🔥 Remove notion integration up to CLI |
2022-06-10 |
|||
📝 Rename from lamindb to LaminDB & rewrite the landing page |
2022-06-10 |
0.0.3 |
||
🏗️ Introduce field |
2022-06-09 |
|||
🚚 Rename global |
2022-06-09 |
|||
✨ Track python package dependencies in |
2022-06-09 |
|||
✨ Track title of ingesting notebook in |
2022-06-09 |
|||
🐛 Fix user & notebook ingestion, add another test dataset |
2022-06-08 |
|||
✅ Fix pandas load, add tests for converting between sqlcore & pandas, add tests for setup |
||||
✨ Add introspection: |
||||
✨ Add entity |
||||
🚸 Auto-create local storage dir & cache dir |
||||
✅ Add a test for db creation & file ingestion |
||||
🏗️ Name the database file like the storage root directory |
||||
♻️ Refactor |
||||
🔧 Refactor |
||||
🔥 Remove versioneer |
||||
👷 Track changes as in |
2022-06-07 |
|||
🏗️ Basic file ingestion from a notebook |
2022-06-06 |
|||
🔥 Remove |
2022-06-04 |
|||
📄 Change format of license file |
2022-05-23 |
|||
📝 Fix faq link |
2022-05-26 |
|||
♻️ Update to cookiecutter 0.2.0 |
2022-05-23 |
|||
💄 More narrow sidebar |
2022-05-11 |
|||
💄 Switch |
2022-05-11 |
|||
📝 Polish the documentation |
2022-05-11 |
|||
🚚 Migrated from |