bionty.Protein#
- class bionty.Protein(name: str | None, uniprotkb_id: str | None, synonyms: str | None, length: int | None, gene_symbol: str | None, ensembl_gene_ids: str | None, organism: lnschema_bionty.models.Organism | None, public_source: lnschema_bionty.models.PublicSource | None)#
- class bionty.Protein(*db_args)
Bases:
BioRegistry
Proteins - Uniprot.
Notes
Bulk create Protein records via
from_values
.Examples
>>> record = bionty.Protein.from_public(name="Synaptotagmin-15B", organism="human") >>> record = bionty.Protein.from_public(gene_symbol="SYT15B", organism="human")
Fields
- id AutoField
Internal id, valid only in one DB instance.
- uid CharField
A universal id (hash of selected field).
- name CharField
Unique name of a protein.
- uniprotkb_id CharField
UniProt protein ID, 6 alphanumeric characters, possibly suffixed by 4 more.
- synonyms TextField
Bar-separated (|) synonyms that correspond to this protein.
- length BigIntegerField
Length of the protein sequence.
- gene_symbol CharField
The primary gene symbol corresponds to this protein.
- ensembl_gene_ids TextField
Bar-separated (|) Ensembl Gene IDs that correspond to this protein.
- organism ForeignKey
Organism
this protein associates with.
- public_source ForeignKey
PublicSource
this protein associates with.
- created_at DateTimeField
Time of creation of record.
- updated_at DateTimeField
Time of last update to record.
- created_by ForeignKey
Creator of record, a
User
.
- artifacts ManyToManyField
Artifacts linked to the protein.
- collections ManyToManyField
Collections linked to the protein.
- feature_sets ManyToManyField
Featuresets linked to this protein.
Methods