Pipelines

Workflow managers (Nextflow, Snakemake, redun, etc.) schedule, execute, and track pipeline runs with a great level of control & metadata.

LaminDB complements such tools by

1. tracking data lineage on a higher level (across pipelines, notebooks & app uploads)

2. modeling data using biological entities

The following use cases demonstrate how to integrate LaminDB with workflow managers:

• Redun
• Nextflow
• Snakemake