GWS CRIPSRa analysis

!lamin login testuser2

import lamindb as ln

ln.settings.transform.stem_uid = "T0T28btuB0PG"
ln.settings.transform.version = "1"
ln.track()

Access the UI-uploaded artifact

input_file = ln.Artifact.filter(key="schmidt22-crispra-gws-IFNG.csv").one()

Identify hits

input_df = input_file.load().set_index("id")
output_df = input_df[input_df["pos|fdr"] < 0.01].copy()

Register hits in output artifact

ln.Artifact.from_df(output_df, description="hits from schmidt22 crispra GWS").save()

#ln.finish()