Transfer data#

Here, we’ll show how to transfer data from another instance into the current instance.

!lamin init --storage ./test-transfer --schema bionty

💡 connected lamindb: anonymous/test-transfer

import lamindb as ln
import bionty as bt

bt.settings.organism = "human"
ln.settings.transform.stem_uid = "ITeOtm7bhtdq"
ln.settings.transform.version = "1"
ln.track()

💡 connected lamindb: anonymous/test-transfer

💡 notebook imports: bionty==0.42.9 lamindb==0.71.0

💡 saved: Transform(uid='ITeOtm7bhtdq5zKv', name='Transfer data', key='transfer', version='1', type='notebook', updated_at=2024-05-01 18:51:01 UTC, created_by_id=1)

💡 saved: Run(uid='mfSHgAL8NzkiATKvQhXR', transform_id=1, created_by_id=1)

All artifacts in the laminlabs/cellxgene clone of CZ CELLxGENE (for more info, see here):

artifacts = ln.Artifact.using("laminlabs/cellxgene")
artifacts.df().head()
Hide code cell output
uid storage_id key suffix accessor description version size hash hash_type n_objects n_observations transform_id run_id visibility key_is_virtual created_at updated_at created_by_id
id
1717 6GM0siRkIUISUwpFb54A 2 cell-census/2023-07-25/h5ads/ff12e239-9292-4d2... .h5ad AnnData Pla_HDBR9518710 2023-07-25 21993955 PFgOHr86dGrEOrPELpKvrQ-3 md5-n None 1216.0 11.0 16.0 1 False 2023-11-28 21:46:39.659067+00:00 2024-01-24 07:05:41.771446+00:00 1
1613 qnlBU5a6OR46Zkku1gEl 2 cell-census/2023-07-25/h5ads/dfe8e072-94a7-415... .h5ad AnnData WS_PLA_S9101764 2023-07-25 39725919 -2OE3CsXIxegNGOQO7cJVw-5 md5-n None 3568.0 11.0 16.0 1 False 2023-11-28 21:46:33.371255+00:00 2024-01-24 07:05:43.770581+00:00 1
1497 w6UNsyZp0eTrl3Uz15Wl 2 cell-census/2023-07-25/h5ads/c1568274-2af2-4cd... .h5ad AnnData WS_PLA_S9101769 2023-07-25 34328778 oaxWjROHsHneVVf7VgcoaA-5 md5-n None 3130.0 11.0 16.0 1 False 2023-11-28 21:46:26.369149+00:00 2024-01-24 07:05:45.247888+00:00 1
1434 txst3MWWFtvPGcYOR145 2 cell-census/2023-07-25/h5ads/ab326369-b63c-48d... .h5ad AnnData primary_trophoblast_organoid 2023-07-25 530799215 2i7cuX3r562-mfIK8GYAyA-64 md5-n None 26853.0 11.0 16.0 1 False 2023-11-28 21:46:22.575516+00:00 2024-01-24 07:05:45.699596+00:00 1
979 Vd2uGOTQOwleGdFRlEOp 2 cell-census/2023-07-25/h5ads/1fe63353-9e75-482... .h5ad AnnData Heart - A single-cell transcriptomic atlas cha... 2023-07-25 148387585 4keMLCOrr6OP70fPvE0TIQ-18 md5-n None 8613.0 11.0 16.0 1 False 2023-11-28 21:45:55.034851+00:00 2024-01-24 07:15:09.559452+00:00 1

Query or search the queryset:

artifact = artifacts.filter(description__icontains="tabula sapiens").first()
artifact
Hide code cell output 
Artifact(uid='7JWPBDDaO3v4bsarcj50', key='cell-census/2023-07-25/h5ads/f01bdd17-4902-40f5-86e3-240d66dd2587.h5ad', suffix='.h5ad', accessor='AnnData', description='Tabula Sapiens - Salivary_Gland', version='2023-07-25', size=575121838, hash='4DpycNCrKc_Q_pEYmPXZRw-69', hash_type='md5-n', n_observations=27199, visibility=1, key_is_virtual=False, updated_at=2024-01-24 07:05:50 UTC, storage_id=2, transform_id=11, run_id=16, created_by_id=1)

Save the artifact to the default instance:

artifact.save()
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❗ now recursing through parents: this only happens once, but is much slower than bulk saving

❗ now recursing through parents: this only happens once, but is much slower than bulk saving

❗ now recursing through parents: this only happens once, but is much slower than bulk saving

❗ now recursing through parents: this only happens once, but is much slower than bulk saving

❗ did not create Disease record for 1 non-validated ontology_id: 'PATO:0000461'

❗ now recursing through parents: this only happens once, but is much slower than bulk saving

❗ did not create Phenotype records for 2 non-validated ontology_ids: 'PATO:0000384', 'PATO:0000383'

Artifact(uid='7JWPBDDaO3v4bsarcj50', key='cell-census/2023-07-25/h5ads/f01bdd17-4902-40f5-86e3-240d66dd2587.h5ad', suffix='.h5ad', accessor='AnnData', description='Tabula Sapiens - Salivary_Gland', version='2023-07-25', size=575121838, hash='4DpycNCrKc_Q_pEYmPXZRw-69', hash_type='md5-n', n_observations=27199, visibility=1, key_is_virtual=False, updated_at=2024-05-01 18:51:04 UTC, storage_id=2, transform_id=1, run_id=1, created_by_id=1)

All features & labels have been transferred, the data itself is still on CZ’s S3:

artifact.describe()
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Artifact(uid='7JWPBDDaO3v4bsarcj50', key='cell-census/2023-07-25/h5ads/f01bdd17-4902-40f5-86e3-240d66dd2587.h5ad', suffix='.h5ad', accessor='AnnData', description='Tabula Sapiens - Salivary_Gland', version='2023-07-25', size=575121838, hash='4DpycNCrKc_Q_pEYmPXZRw-69', hash_type='md5-n', n_observations=27199, visibility=1, key_is_virtual=False, updated_at=2024-05-01 18:51:04 UTC)

Provenance:
  📎 storage: Storage(uid='oIYGbD74', root='s3://cellxgene-data-public', type='s3', region='us-west-2')
  📎 transform: Transform(uid='ITeOtm7bhtdq5zKv', name='Transfer data', key='transfer', version='1', type='notebook')
  📎 run: Run(uid='mfSHgAL8NzkiATKvQhXR', started_at=2024-05-01 18:51:01 UTC, is_consecutive=True)
  📎 created_by: User(uid='00000000', handle='anonymous')
Features:
  obs: FeatureSet(uid='86f2wCKECBj0Det36Wo5', n=11, registry='core.Feature')
    🔗 tissue (2, bionty.Tissue): 'sublingual gland', 'parotid gland'
    🔗 tissue_type (1, core.ULabel): 'tissue'
    🔗 assay (2, bionty.ExperimentalFactor): '10x 3' v3', 'Smart-seq2'
    🔗 cell_type (24, bionty.CellType): 'myoepithelial cell', 'endothelial cell of hepatic sinusoid', 'acinar cell of salivary gland', 'CD8-positive, alpha-beta T cell', 'endothelial cell of lymphatic vessel', 'ionocyte', 'macrophage', 'T cell', 'neutrophil', 'duct epithelial cell', ...
    🔗 development_stage (2, bionty.DevelopmentalStage): '69-year-old human stage', '59-year-old human stage'
    🔗 disease (1, bionty.Disease): 'normal'
    🔗 donor_id (2, core.ULabel): 'TSP7', 'TSP14'
    🔗 self_reported_ethnicity (1, bionty.Ethnicity): 'European'
    🔗 sex (2, bionty.Phenotype): 'male', 'female'
    🔗 suspension_type (1, core.ULabel): 'cell'
    🔗 organism (1, bionty.Organism): 'human'
  var: FeatureSet(uid='d1duVxaIcXigWfu9lIz4', n=58604, type='number', registry='bionty.Gene')
    'DERL2', 'ENO4', 'H3P13', 'MED28P5', 'ATP8B3', 'LINC02750', 'CNOT4P1', 'HCG15', 'OR14A16', 'IGHV3-73', 'ASPHD1', 'HMSD', 'UNC5CL', 'TBC1D3P4', 'RNU6-1188P', 'RPL3P7', 'SMIM45', 'TMEM183AP5', 'SNX3P1X', 'USP9YP30', ...
Labels:
  📎 organism (1, bionty.Organism): 'human'
  📎 tissues (2, bionty.Tissue): 'sublingual gland', 'parotid gland'
  📎 cell_types (24, bionty.CellType): 'myoepithelial cell', 'endothelial cell of hepatic sinusoid', 'acinar cell of salivary gland', 'CD8-positive, alpha-beta T cell', 'endothelial cell of lymphatic vessel', 'ionocyte', 'macrophage', 'T cell', 'neutrophil', 'duct epithelial cell', ...
  📎 diseases (1, bionty.Disease): 'normal'
  📎 phenotypes (2, bionty.Phenotype): 'male', 'female'
  📎 experimental_factors (2, bionty.ExperimentalFactor): '10x 3' v3', 'Smart-seq2'
  📎 developmental_stages (2, bionty.DevelopmentalStage): '69-year-old human stage', '59-year-old human stage'
  📎 ethnicities (1, bionty.Ethnicity): 'European'
  📎 ulabels (4, core.ULabel): 'cell', 'TSP7', 'TSP14', 'tissue'

The database is populated correspondingly.

ln.view()
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****************

* module: core *

****************

Artifact
uid storage_id key suffix accessor description version size hash hash_type n_objects n_observations transform_id run_id visibility key_is_virtual created_at updated_at created_by_id
id
1 7JWPBDDaO3v4bsarcj50 2 cell-census/2023-07-25/h5ads/f01bdd17-4902-40f... .h5ad AnnData Tabula Sapiens - Salivary_Gland 2023-07-25 575121838 4DpycNCrKc_Q_pEYmPXZRw-69 md5-n None 27199 1 1 1 False 2024-05-01 18:51:04.127139+00:00 2024-05-01 18:51:04.127162+00:00 1 
Feature
uid name type unit description registries synonyms created_at updated_at created_by_id
id
11 wCbvLeKe2rv8 organism category None None bionty.Organism None 2024-05-01 18:51:05.153290+00:00 2024-05-01 18:51:05.153302+00:00 1
10 9s20Imh64bYU suspension_type category None MUST be 'cell', 'nucleus', or 'na' core.ULabel None 2024-05-01 18:51:05.153175+00:00 2024-05-01 18:51:05.153188+00:00 1
9 Xcti9JkM9uvG sex category None None bionty.Phenotype None 2024-05-01 18:51:05.153060+00:00 2024-05-01 18:51:05.153073+00:00 1
8 DbVAV4BaQXAh self_reported_ethnicity category None None bionty.Ethnicity None 2024-05-01 18:51:05.152945+00:00 2024-05-01 18:51:05.152958+00:00 1
7 xbMGSIMHV67J donor_id category None None core.ULabel None 2024-05-01 18:51:05.152830+00:00 2024-05-01 18:51:05.152843+00:00 1
6 UnTz4XK8XGd0 disease category None None bionty.Disease None 2024-05-01 18:51:05.152714+00:00 2024-05-01 18:51:05.152727+00:00 1
5 Up1fqy1APH21 development_stage category None None bionty.DevelopmentalStage None 2024-05-01 18:51:05.152598+00:00 2024-05-01 18:51:05.152611+00:00 1 
FeatureSet
uid name n type registry hash created_at updated_at created_by_id
id
2 d1duVxaIcXigWfu9lIz4 None 58604 number bionty.Gene vGM2j-OZYfQ4-9KsK75K 2024-05-01 18:51:58.651135+00:00 2024-05-01 18:51:58.651169+00:00 1
1 86f2wCKECBj0Det36Wo5 None 11 None core.Feature FqF5x0w1rGBjZBGzh-Qr 2024-05-01 18:51:05.165027+00:00 2024-05-01 18:51:05.165050+00:00 1 
Run
uid transform_id started_at finished_at created_by_id json report_id environment_id is_consecutive reference reference_type created_at
id
1 mfSHgAL8NzkiATKvQhXR 1 2024-05-01 18:51:01.611460+00:00 None 1 None None None True None None 2024-05-01 18:51:01.611604+00:00 
Storage
uid root description type region instance_uid created_at updated_at created_by_id
id
2 oIYGbD74 s3://cellxgene-data-public None s3 us-west-2 None 2024-05-01 18:51:04.124570+00:00 2024-05-01 18:51:04.124600+00:00 1
1 LU69JClW3Zne /home/runner/work/lamindb/lamindb/docs/test-tr... None local None 1FHu5eE0uxm4 2024-05-01 18:50:58.196635+00:00 2024-05-01 18:50:58.196660+00:00 1 
Transform
uid name key version description type latest_report_id source_code_id reference reference_type created_at updated_at created_by_id
id
1 ITeOtm7bhtdq5zKv Transfer data transfer 1 None notebook None None None None 2024-05-01 18:51:01.604403+00:00 2024-05-01 18:51:01.604446+00:00 1 
ULabel
uid name description reference reference_type created_at updated_at created_by_id
id
4 WzKPMCXX cell None None None 2024-05-01 18:52:53.135856+00:00 2024-05-01 18:52:53.135887+00:00 1
3 1s9HrDbk TSP7 None None None 2024-05-01 18:52:49.636514+00:00 2024-05-01 18:52:49.636528+00:00 1
2 HVoqm0bp TSP14 None None None 2024-05-01 18:52:49.636396+00:00 2024-05-01 18:52:49.636424+00:00 1
1 orwn0HKG tissue None None None 2024-05-01 18:52:11.703761+00:00 2024-05-01 18:52:11.703792+00:00 1 
User
uid handle name created_at updated_at
id
1 00000000 anonymous None 2024-05-01 18:50:58.192087+00:00 2024-05-01 18:50:58.192116+00:00 
******************

* module: bionty *

******************

CellType
uid name ontology_id abbr synonyms description public_source_id created_at updated_at created_by_id
id
78 7glBbUDw protein secreting cell CL:0000154 None None None 21 2024-05-01 18:52:45.519568+00:00 2024-05-01 18:52:45.519598+00:00 1
77 1uUQwGAL endo-epithelial cell CL:0002076 None None An Epithelial Cell Derived From Endoderm. 21 2024-05-01 18:52:44.790557+00:00 2024-05-01 18:52:44.790587+00:00 1
76 4eEkKmdU secretory cell CL:0000151 None None A Cell That Specializes In Controlled Release ... 21 2024-05-01 18:52:44.167868+00:00 2024-05-01 18:52:44.167898+00:00 1
75 6o2T6eYX epithelial cell of alimentary canal CL:0002251 None None An Epithelial Cell Of The Musculomembranous Di... 21 2024-05-01 18:52:43.474941+00:00 2024-05-01 18:52:43.474954+00:00 1
74 4cUGHo42 exocrine cell CL:0000152 None None A Cell Of An Exocrine Gland; I.E. A Gland That... 21 2024-05-01 18:52:43.474816+00:00 2024-05-01 18:52:43.474830+00:00 1
73 41jKWil4 glandular epithelial cell CL:0000150 None None A Specialized Epithelial Cell That Is Capable ... 21 2024-05-01 18:52:43.474666+00:00 2024-05-01 18:52:43.474697+00:00 1
72 4CcnyLVr acinar cell CL:0000622 None acinic cell|acinous cell A Secretory Cell That Is Grouped Together With... 21 2024-05-01 18:52:42.767668+00:00 2024-05-01 18:52:42.767683+00:00 1 
DevelopmentalStage
uid name ontology_id abbr synonyms description public_source_id created_at updated_at created_by_id
id
3 7k1A0zkT human life cycle stage HsapDv:0000000 None developmental stage A Spatiotemporal Region Encompassing Some Part... 52 2024-05-01 18:52:47.123240+00:00 2024-05-01 18:52:47.123271+00:00 1
2 5q64GXx1 69-year-old human stage HsapDv:0000163 None None Adult Stage That Refers To An Adult Who Is Ove... 52 2024-05-01 18:52:46.396778+00:00 2024-05-01 18:52:46.396793+00:00 1
1 2zxrb1Pu 59-year-old human stage HsapDv:0000153 None None Middle Aged Stage That Refers To An Adult Who ... 52 2024-05-01 18:52:46.396630+00:00 2024-05-01 18:52:46.396660+00:00 1 
Disease
uid name ontology_id abbr synonyms description public_source_id created_at updated_at created_by_id
id
1 6IZiH6X8 normal PATO:0000461 None None A Quality Inhering In A Bearer By Virtue Of Th... 47 2024-05-01 18:52:49.310857+00:00 2024-05-01 18:52:49.310887+00:00 1 
Ethnicity
uid name ontology_id abbr synonyms description public_source_id created_at updated_at created_by_id
id
2 6Tnv21Sw ancestry category HANCESTRO:0004 None ancestral group Population Category Defined Using Ancestry Inf... 54 2024-05-01 18:52:51.326132+00:00 2024-05-01 18:52:51.326161+00:00 1
1 15mGvAtW European HANCESTRO:0005 None Caucasian|white Includes Individuals Who Either Self-Report Or... 54 2024-05-01 18:52:50.599225+00:00 2024-05-01 18:52:50.599255+00:00 1 
ExperimentalFactor
uid name ontology_id abbr synonyms description molecule instrument measurement public_source_id created_at updated_at created_by_id
id
9 6JvKxplX 10x technology EFO:0008995 None 10x Genomics|10x single cell library construction 10X Is A "Synthetic Long-Read" Technology And ... None None None 39 2024-05-01 18:52:17.317006+00:00 2024-05-01 18:52:17.317037+00:00 1
8 1SAR2Y26 10x transcription profiling EFO:0030080 None None The 10X-Based Single-Cell Technology That Sequ... None None None 39 2024-05-01 18:52:16.633623+00:00 2024-05-01 18:52:16.633654+00:00 1
7 2kXleO7C 10x 3' transcription profiling EFO:0030003 None None 10X 3' Transcription Profiling Is The 10X-Base... None None None 39 2024-05-01 18:52:15.819827+00:00 2024-05-01 18:52:15.819859+00:00 1
6 5q5okCXl single cell library construction EFO:0010183 None single-cell library preparation|single-cell li... A Library Preparation Process That Starts From... None None None 39 2024-05-01 18:52:15.028050+00:00 2024-05-01 18:52:15.028080+00:00 1
5 1wLRxESw assay by molecule EFO:0002772 None None None None None None 39 2024-05-01 18:52:14.357364+00:00 2024-05-01 18:52:14.357395+00:00 1
4 1x8VaVN0 Smart-like EFO:0010184 None None Library Construction Method Using The Smart (S... None None None 39 2024-05-01 18:52:13.567343+00:00 2024-05-01 18:52:13.567358+00:00 1
3 789nVHwo RNA assay EFO:0001457 None None An Assay With Input Rna RNA assay None None 39 2024-05-01 18:52:13.567161+00:00 2024-05-01 18:52:13.567192+00:00 1 
Gene
uid symbol stable_id ensembl_gene_id ncbi_gene_ids biotype description synonyms organism_id public_source_id created_at updated_at created_by_id
id
58604 1aFBxW64W53c RP1-228P16.8 None ENSG00000276814 None None None None 1 9 2024-05-01 18:51:54.608212+00:00 2024-05-01 18:51:54.608227+00:00 1
58603 5SZpPLVNTEDG RP11-118B22.2 None ENSG00000256427 None None None None 1 9 2024-05-01 18:51:54.608049+00:00 2024-05-01 18:51:54.608062+00:00 1
58602 iGHPHX0SjTTi RP11-69M1.8 None ENSG00000282080 None None None None 1 9 2024-05-01 18:51:54.607893+00:00 2024-05-01 18:51:54.607906+00:00 1
58601 krBYTJVPPY8i RP11-196E1.3 None ENSG00000254561 None None None None 1 9 2024-05-01 18:51:54.607738+00:00 2024-05-01 18:51:54.607751+00:00 1
58600 5IyCVjNwe3KV RP11-334E6.3 None ENSG00000254740 None None None None 1 9 2024-05-01 18:51:54.607586+00:00 2024-05-01 18:51:54.607599+00:00 1
58599 14gTjcZXDS5z RP11-959F10.6 None ENSG00000256863 None None None None 1 9 2024-05-01 18:51:54.607433+00:00 2024-05-01 18:51:54.607447+00:00 1
58598 5ILZRV3F2hQ8 MTRNR2L8 None ENSG00000255823 None None None None 1 9 2024-05-01 18:51:54.607278+00:00 2024-05-01 18:51:54.607292+00:00 1 
Organism
uid name ontology_id scientific_name public_source_id created_at updated_at created_by_id
id
1 1dpCL6Td human NCBITaxon:9606 homo_sapiens 1 2024-05-01 18:51:00.273145+00:00 2024-05-01 18:51:00.273202+00:00 1 
Phenotype
uid name ontology_id abbr synonyms description public_source_id created_at updated_at created_by_id
id
2 3OV8JZsS female PATO:0000383 None None A Biological Sex Quality Inhering In An Indivi... 47 2024-05-01 18:52:52.808808+00:00 2024-05-01 18:52:52.808823+00:00 1
1 kniZxLLf male PATO:0000384 None None A Biological Sex Quality Inhering In An Indivi... 47 2024-05-01 18:52:52.808664+00:00 2024-05-01 18:52:52.808692+00:00 1 
PublicSource
uid entity organism currently_used source source_name version url md5 source_website created_at updated_at created_by_id
id
55 5JnV BioSample all True ncbi NCBI BioSample attributes 2023-09 s3://bionty-assets/df_all__ncbi__2023-09__BioS... 918db9bd1734b97c596c67d9654a4126 https://www.ncbi.nlm.nih.gov/biosample/docs/at... 2024-05-01 18:50:58.281572+00:00 2024-05-01 18:50:58.281587+00:00 1
54 3Tlc Ethnicity human True hancestro Human Ancestry Ontology 3.0 https://github.com/EBISPOT/hancestro/raw/3.0/h... 76dd9efda9c2abd4bc32fc57c0b755dd https://github.com/EBISPOT/hancestro 2024-05-01 18:50:58.281408+00:00 2024-05-01 18:50:58.281421+00:00 1
53 16tR DevelopmentalStage mouse True mmusdv Mouse Developmental Stages 2020-03-10 http://aber-owl.net/media/ontologies/MMUSDV/9/... 5bef72395d853c7f65450e6c2a1fc653 https://github.com/obophenotype/developmental-... 2024-05-01 18:50:58.281272+00:00 2024-05-01 18:50:58.281285+00:00 1
52 7CRn DevelopmentalStage human True hsapdv Human Developmental Stages 2020-03-10 http://aber-owl.net/media/ontologies/HSAPDV/11... 52181d59df84578ed69214a5cb614036 https://github.com/obophenotype/developmental-... 2024-05-01 18:50:58.281137+00:00 2024-05-01 18:50:58.281150+00:00 1
51 3TI0 Drug all True dron Drug Ontology 2023-03-10 https://data.bioontology.org/ontologies/DRON/s... 75e86011158fae76bb46d96662a33ba3 https://bioportal.bioontology.org/ontologies/DRON 2024-05-01 18:50:58.281002+00:00 2024-05-01 18:50:58.281014+00:00 1
50 3rm9 BFXPipeline all True lamin Bioinformatics Pipeline 1.0.0 s3://bionty-assets/bfxpipelines.json a7eff57a256994692fba46e0199ffc94 https://lamin.ai 2024-05-01 18:50:58.280867+00:00 2024-05-01 18:50:58.280880+00:00 1
49 QfYh Pathway all False pw Pathway Ontology 7.79 https://data.bioontology.org/ontologies/PW/sub... 02e2337bb1ab7cc4332ef6acc4cbdfa6 https://www.ebi.ac.uk/ols/ontologies/pw 2024-05-01 18:50:58.280732+00:00 2024-05-01 18:50:58.280745+00:00 1 
Tissue
uid name ontology_id abbr synonyms description public_source_id created_at updated_at created_by_id
id
17 7SvOepT5 buccal salivary gland UBERON:0012102 None None A Salivary Gland That Is Part Of A Cheek. 25 2024-05-01 18:52:11.358209+00:00 2024-05-01 18:52:11.358224+00:00 1
16 6TiLnvMv serous gland UBERON:0000409 None None A Gland In Which The Principal Secretory Cells... 25 2024-05-01 18:52:11.358057+00:00 2024-05-01 18:52:11.358090+00:00 1
15 4o2HviGe multicellular anatomical structure UBERON:0010000 None multicellular structure An Anatomical Structure That Has More Than One... 25 2024-05-01 18:52:10.500713+00:00 2024-05-01 18:52:10.500743+00:00 1
14 7HJIkVT2 organ UBERON:0000062 None None Anatomical Structure That Performs A Specific ... 25 2024-05-01 18:52:09.867851+00:00 2024-05-01 18:52:09.867892+00:00 1
13 1piRkddj digestive system element UBERON:0013765 None digestive organ|digestive system organ Any Of The Organs Or Elements That Are Part Of... 25 2024-05-01 18:52:09.141977+00:00 2024-05-01 18:52:09.141992+00:00 1
12 2PA5WYod gland UBERON:0002530 None glandular organ An Organ That Functions As A Secretory Or Excr... 25 2024-05-01 18:52:09.141828+00:00 2024-05-01 18:52:09.141860+00:00 1
11 6dBB06kF exocrine gland UBERON:0002365 None glandula exocrina|ducted gland A Gland That Secretes Products (Excluding Horm... 25 2024-05-01 18:52:08.426261+00:00 2024-05-01 18:52:08.426275+00:00 1
Hide code cell content 
# clean up test instance
!lamin delete --force test-transfer
!rm -r test-transfer

💡 deleting instance anonymous/test-transfer

rm: cannot remove 'test-transfer': No such file or directory